Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0216 ATGTCACAAGACTCTGAGGAGATAAAGACCATTGAGCAGTGGAAATGGTCTGAAATGCAAGGCCTTGAGCTTGTCTCTGATGCTTCTGATTCATCATATAAACCAGAGGAAGATCCTCAACACCAAGTTCCAAGGGAAATGGACACTTCTGAACCCAACAAAGATGCTTCTGCTTCTGCTACTTCTGTTGCTGCAACAAGTAATGGAGAGAAGCCAGAGAGTGTTCCCTCTGTTGGGTTTGGAGAGCTTTTCAGATTTGCTGATGGGTTGGATTACATTCTCATGGCAATTGGAACTGTTGGAGCAATAGTACATGGTTGTTCTTTGCCTCTCTTTCTTCGTTTCTTTGCGGATCTTGTGAATTCTTTCGGTTCCAATGCTAATAATGTGGACAAGATGACCCAGGAAGTGGTGAAGTATGCATTTTACTTCTTGGTGGTGGGTGCTGCTATATGGGCATCTTCATGGGCTGAGATTTCGTGTTGGATGTGGACTGGGGAGCGTCAATCAACCAAGATGAGGATCAAGTACTTGGAAGCTGCGTTGAACCAGGACATTCAGTTCTTTGATACTGAGGTTCGAACATCCGATGTTGTTTTTGCTATCAACACTGATGCTGTGATGGTTCAGGATGCAATTAGTGAGAAGCTGGGGAATTTCATTCACTACATGGCCACGTTTGTTTCTGGTTTTGTTGTGGGTTTCACTGCTGTGTGGCAATTGGCTTTGGTCACACTCGCTGTTGTGCCTATGATAGCTGTGATTGGAGCCATTCACACCACCACCTTGGCCAAGCTCTCTGTTAAGAGCCAAGAAGCACTTTCTCAAGCTGGCAACATTGTGGAGCAGACAATTGCGCAAATCCGAGTAGTGGCGGCCTTTGTTGGGGAGTCAAGAGCATTGCAGGCCTATTCATCAGCCTTGAAGATTGCACAGAAGATTGGATACAAAACTGGGTTTGCAAAGGGAATGGGATTGGGTGCCACTTACTTTGTTGTTTTCTGCTGTTATGCACTTCTGCTATGGTATGGAGGCTATTTGGTTAGGCACCACTTCACCAATGGAGGACTTGCCATTGCAACCATGTTTGCTGTTATGATTGGTGGACTGGGTTTGGGGCAATCTGCACCTAGCATGGCTGCTTTTACAAAGGCTAGAGTTGCTGCAGCAAAGATTTTTCGTATAATTGATCACAAGCCTGGTATAGATCGAAATAGTGAATCTGGCATGGAACTAGAGACAGTTACTGGCCTTGTGGAACTGAAAAATGTGAACTTTTCTTACCCATCTAGGCCAGATGTTAGGATACTCAATGATTTCTCACTGAATGTGCCTGCGGGCAAGACCATTGCTTTGGTGGGTAGCAGTGGTTCTGGCAAGAGCACTGTTGTTTCCCTCATTGAGAGATTCTATGATCCAACTTCAGGACAAGTTCTACTAGATGGGCATGACATTAAAACATTGAAGCTGAGATGGCTAAGGCAGCAGATAGGACTGGTGAGCCAAGAGCCTGCTTTGTTTGCCACCACTATTCGAGAAAATATATTGTTGGGTAGGCCTGATGCAAACCAGGTTGAGATTGAAGAAGCTGCCAGGGTTGCTAATGCCCATTCCTTCATTGTTAAACTTCCCGATGGCTATGAAACCCAGGTAGGAGAAAGAGGGTTGCAACTTTCTGGAGGACAAAAACAGAGAATAGCAATAGCAAGGGCAATGCTGAAAAACCCTGCTATTCTTCTCTTAGATGAGGCAACAAGTGCATTGGATTCAGAGTCAGAGAAGCTGGTGCAAGAAGCCCTTGATCGGTTCATGATTGGCAGAACAACTCTTGTAATTGCTCATCGCCTTTCCACGATTCGCAAAGCTGACCTTGTAGCTGTACTTCAGCAAGGAAGTGTTTCTGAAATTGGAACTCATGATGAACTATTCTCAAAAGGTGAAAATGGAGTCTATGCCAAGCTTATAAGGATGCAAGAGATGGCTCATGAAACAGCTATTAATAATGCTAGAAAGAGTAGTGCAAGGCCTTCAAGTGCTAGAAACTCAGTAAGCTCACCCATAATTGCTAGGAATTCTTCATATGGCCGGTCACCATACTCCCGCAGGCTATCTGATTTCTCTACATCTGACTTTAGTCTGTCCCTTGACGCATCGCATCCAAATTACAGGCTTGAAAAGCTTGCTTTCAAAGAGCAAGCGAGTTCCTTTTGGCGACTTGCGAAAATGAACTCTCCTGAGTGGCTTTATGCTTTGATTGGCTCTATAGGGTCTGTTGTTTGTGGATCCCTTAGTGCGTTCTTTGCTTATGTTCTGAGTGCTGTCCTCAGTGTGTATTACAATCCAGACCACAGATACATGATCCGTGAAATAGAAAAGTACTGCTACTTGTTGATTGGCCTTTCATCAACTGCACTTCTCTTCAACACATTGCAACACTTCTTCTGGGACATTGTTGGGGAAAATCTTACAAAACGGGTGAGGGAGAAAATGCTGACGGCGGTGCTAAAAAACGAAATGGCATGGTTTGATCAAGAGGAAAATGAGAGTGCCAGGATTGCTGCAAGGCTGGCTCTTGATGCCAACAATGTTAGATCAGCAATTGGAGATAGAATTTCAGTGATTGTGCAGAACACTGCACTTATGCTAGTTGCTTGTACTGCAGGGTTTGTGTTGCAGTGGCGCCTTGCACTTGTCCTCATAGCTGTCTTCCCTGTTGTTGTTGCTGCCACTGTATTGCAGAAAATGTTCATGACTGGTTTCTCTGGTGACTTGGAAGCTGCTCATGCCAAGGCTACACAACTAGCAGGTGAAGCTATAGCCAATGTAAGAACTGTTGCAGCTTTCAATTCAGAAACAAAAATTGTTGGCCTTTTCAGCTCCAATCTCCAAGCTCCGCTTCAACGTTGCTTTTGGAAGGGACAAATTTCTGGAAGTGGATATGGGATAGCTCAGTTTGCTCTTTATGCTTCCTATGCACTTGGTCTTTGGTATGCTTCTTGGCTAGTGAAGCACGGCATTTCTGACTTCTCTAAAACAATCCGAGTTTTCATGGTACTAATGGTTTCTGCTAATGGTGCTGCTGAAACCTTAACACTGGCTCCTGATTTTATCAAAGGAGGCAGAGCCATGAGGTCAGTTTTTGATCTCCTTGACCGTAGAACTGAAATTGAGCCAGATGACCAAGATGCTACTCCTGTTCCTGATCGTCTTCGCGGCGAAGTTGAACTTAAACATGTTGATTTCTCTTATCCAACTAGGCCAGATATGCCAGTTTTTCGTGATCTCAGTCTTCGTGCCAGAGCTGGTAAAACTCTTGCACTTGTAGGGCCTAGTGGTTGTGGTAAGAGCTCAGTAATTGCACTTATACAAAGATTCTATGATCCAACATCTGGTAGAGTCATGATTGATGGCAAGGATATCAGGAAATACAACCTCAAGTCCTTAAGAAGACACATTTCTGTGGTACCTCAGGAACCATGCTTGTTTGCTACTACTATTTATGAAAATATTGCTTATGGGCATGATTCAGCTACTGAAGCTGAGATAATTGAGGCTGCAACTCTTGCCAATGCACACAAGTTCATATCTGGTTTGCCAGATGGATACAAAACATTTGTTGGAGAGAGAGGTGTTCAACTGTCTGGTGGACAAAAACAAAGAATAGCAGTTGCTCGTGCTTTCGTGAGGAAGGCAGAACTCATGCTTCTTGATGAGGCAACAAGTGCACTTGATGCTGAATCTGAGAGGTCTGTTCAGGAGGCACTAGACCGCGCCTCCTCAGGAAAAACAACTATTATTGTTGCACACAGGCTATCTACTATCAGGAATGCCAATTTGATTGCTGTGATTGATGATGGGAAAGTAGCTGAGCAAGGTTCTCATTCACAGTTGCTGAAAAATCACCCTGATGGGATTTATGCACGCATGATTCAGTTACAAAGGTTCACACACAGCCAAGTCATTGGAATGGCCTCTGGATCAAGTAGTTCAACAAGACCAAAAGATGATGAAAGAGAAGGCTAG 4023 0.4422 MSQDSEEIKTIEQWKWSEMQGLELVSDASDSSYKPEEDPQHQVPREMDTSEPNKDASASATSVAATSNGEKPESVPSVGFGELFRFADGLDYILMAIGTVGAIVHGCSLPLFLRFFADLVNSFGSNANNVDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALNQDIQFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMIAVIGAIHTTTLAKLSVKSQEALSQAGNIVEQTIAQIRVVAAFVGESRALQAYSSALKIAQKIGYKTGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLGLGQSAPSMAAFTKARVAAAKIFRIIDHKPGIDRNSESGMELETVTGLVELKNVNFSYPSRPDVRILNDFSLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIRENILLGRPDANQVEIEEAARVANAHSFIVKLPDGYETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIRMQEMAHETAINNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASHPNYRLEKLAFKEQASSFWRLAKMNSPEWLYALIGSIGSVVCGSLSAFFAYVLSAVLSVYYNPDHRYMIREIEKYCYLLIGLSSTALLFNTLQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSETKIVGLFSSNLQAPLQRCFWKGQISGSGYGIAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRRTEIEPDDQDATPVPDRLRGEVELKHVDFSYPTRPDMPVFRDLSLRARAGKTLALVGPSGCGKSSVIALIQRFYDPTSGRVMIDGKDIRKYNLKSLRRHISVVPQEPCLFATTIYENIAYGHDSATEAEIIEAATLANAHKFISGLPDGYKTFVGERGVQLSGGQKQRIAVARAFVRKAELMLLDEATSALDAESERSVQEALDRASSGKTTIIVAHRLSTIRNANLIAVIDDGKVAEQGSHSQLLKNHPDGIYARMIQLQRFTHSQVIGMASGSSSSTRPKDDEREG* 1341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0216 1340 SUPERFAMILY ABC transporter transmembrane region 83 403 IPR036640 GO:0005524|GO:0016021
Apr4g0216 1340 Gene3D - 1072 1319 IPR027417 -
Apr4g0216 1340 CDD ABC_MTABC3_MDL1_MDL2 419 658 - -
Apr4g0216 1340 MobiDBLite consensus disorder prediction 30 52 - -
Apr4g0216 1340 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 419 655 IPR003439 GO:0005524
Apr4g0216 1340 Gene3D ABC transporter type 1, transmembrane domain 707 921 IPR036640 GO:0005524|GO:0016021
Apr4g0216 1340 Gene3D ABC transporter type 1, transmembrane domain 973 1071 IPR036640 GO:0005524|GO:0016021
Apr4g0216 1340 Gene3D - 409 659 IPR027417 -
Apr4g0216 1340 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1065 1313 IPR027417 -
Apr4g0216 1340 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 95 1317 IPR039421 -
Apr4g0216 1340 MobiDBLite consensus disorder prediction 26 74 - -
Apr4g0216 1340 ProSitePatterns ABC transporters family signature. 1213 1227 IPR017871 GO:0005524
Apr4g0216 1340 Pfam ABC transporter 1093 1241 IPR003439 GO:0005524
Apr4g0216 1340 Pfam ABC transporter 437 586 IPR003439 GO:0005524
Apr4g0216 1340 Pfam ABC transporter transmembrane region 752 1021 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr4g0216 1340 Pfam ABC transporter transmembrane region 95 369 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr4g0216 1340 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 751 1038 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr4g0216 1340 SMART AAA_5 1101 1293 IPR003593 -
Apr4g0216 1340 SMART AAA_5 446 632 IPR003593 -
Apr4g0216 1340 CDD ABC_6TM_Pgp_ABCB1_D2_like 740 1056 - -
Apr4g0216 1340 Gene3D ABC transporter type 1, transmembrane domain 82 671 IPR036640 GO:0005524|GO:0016021
Apr4g0216 1340 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1074 1310 IPR003439 GO:0005524
Apr4g0216 1340 CDD ABC_6TM_Pgp_ABCB1_D1_like 95 392 - -
Apr4g0216 1340 MobiDBLite consensus disorder prediction 1321 1340 - -
Apr4g0216 1340 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 95 1317 - -
Apr4g0216 1340 MobiDBLite consensus disorder prediction 53 73 - -
Apr4g0216 1340 ProSitePatterns ABC transporters family signature. 558 572 IPR017871 GO:0005524
Apr4g0216 1340 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 96 384 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr4g0216 1340 SUPERFAMILY ABC transporter transmembrane region 738 1058 IPR036640 GO:0005524|GO:0016021
Apr4g0216 1340 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 409 658 IPR027417 -
Apr4g0216 1340 CDD ABC_MTABC3_MDL1_MDL2 1074 1313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0216 Apr-Chr4 1818324 1824624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0216 71 1335 Calmodulin-binding Proteins AT2G36910 89.179 0.0 2320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0216 K05658 - gmx:100814667 2434.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0216 4 1818324 1824624 Apr4g0216 4 1818324 1824624 ECH