Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0205 ATGATGTGTTTTTCATTCTACTATGGAGAGAAGAAAGATGAGCCAAAAGGCTTGCAGTCAACATCGGGTCGATCAGACAATTCCCGACATGTCGAGGCTGAGGTTAGAGGATCTGGTTCTGACTTTAATTCTCTGGATATCTCTGACAGTGGCAGCACTGAATCCCTTAGGAGAAGTGCAATTCCAAGTTTGTCCCAAAGACCCAGTAACCTTAGAGTCTTTACTGTACCTGAATTGAAAACAGCGACAAAAAATTTCAGTCGCTCTGTTATGATTGGAGAGGGTGGGTTTGGGTGTGTCTACCTGGGATCCATTAGAAGTGTGGAGGAACCCTCCAGAAGAATTGAAGTTGCAGTTAAACAGCTTAATAAAAAAGGAATGCAGGGGCATAGGGAATGGGTGACAGAAGTGAATGTACTGGGCATTGTTGAGCATCCCAATCTTGTGAAACTAGTGGGATACTGTGCTGATGATGATGAAAGAGGAATTCAGAGGCTTCTGATCTATGAATACATGGCAAACAGAAGCGTGGAGCACCATTTGTCGCATCGATCAGAGACTCCTCTCCCATGGAGTAGGAGATTAAAAATAGCCCAAGATGCGGCTCGTGGGTTAACATACCTGCATGAGGAAATGGATTTTCAGATAATTTTCAGAGATTTCAAGTCTTCAAATATCCTTTTGGATGAACAGTGGAATGCAAAGCTATCAGACTTTGGGTTGGCAAGGTTGGGACCATCAGATGGACTGACTCATGTCTCAACAGCGGTTGTTGGAACACTGGGATATGCAGCTCCTGAATATATTCAAACTGGACGCCTCACATCAAAGAATGATGTATGGAGCTATGGTGTCTTCCTTTATGAACTCATTACTGGTAGGCGCCCTTTAGATCGAAATCGCCCGAGGGGTGAGCAGAAGTTGTTGGAGTGGATTAGGCCATACTTATCAGACGGAAAGAAATTTCAACTAATATTGGATCCAAGACTTGAAAAGAAACAAGTCATCAAATCAGCTCAGAGACTTGCTGTGATAGCCAATAGATGCTTGGTCAAGAACCCAAAGAATCGCCCAAAGATGAGTGAAGTCTTGGAAATGGTGAATGGAATAGTAGAATCTTCATCCAGTGCGAGTCCACAATTGCCCTTGAAGAGTGTGGCAACAGTGCAAATTTCCCATGATCCTGAAATGAAAAACAAGAAACGTACCATGGATTTGAAGGCTGGAGAAGGTAATTGGTTTGTTAGGATGTGGAGACCAAAGCTTGTAAGAACATGTTGA 1281 0.4325 MMCFSFYYGEKKDEPKGLQSTSGRSDNSRHVEAEVRGSGSDFNSLDISDSGSTESLRRSAIPSLSQRPSNLRVFTVPELKTATKNFSRSVMIGEGGFGCVYLGSIRSVEEPSRRIEVAVKQLNKKGMQGHREWVTEVNVLGIVEHPNLVKLVGYCADDDERGIQRLLIYEYMANRSVEHHLSHRSETPLPWSRRLKIAQDAARGLTYLHEEMDFQIIFRDFKSSNILLDEQWNAKLSDFGLARLGPSDGLTHVSTAVVGTLGYAAPEYIQTGRLTSKNDVWSYGVFLYELITGRRPLDRNRPRGEQKLLEWIRPYLSDGKKFQLILDPRLEKKQVIKSAQRLAVIANRCLVKNPKNRPKMSEVLEMVNGIVESSSSASPQLPLKSVATVQISHDPEMKNKKRTMDLKAGEGNWFVRMWRPKLVRTC* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0205 426 Pfam Protein tyrosine and serine/threonine kinase 91 365 IPR001245 GO:0004672|GO:0006468
Apr4g0205 426 MobiDBLite consensus disorder prediction 41 63 - -
Apr4g0205 426 ProSiteProfiles Protein kinase domain profile. 86 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g0205 426 PANTHER KINASE 1B 12 421 - -
Apr4g0205 426 CDD STKc_IRAK 92 370 - -
Apr4g0205 426 SUPERFAMILY Protein kinase-like (PK-like) 62 367 IPR011009 -
Apr4g0205 426 MobiDBLite consensus disorder prediction 12 63 - -
Apr4g0205 426 PANTHER OS01G0588500 PROTEIN-RELATED 12 421 - -
Apr4g0205 426 Gene3D Phosphorylase Kinase; domain 1 60 171 - -
Apr4g0205 426 Gene3D Transferase(Phosphotransferase) domain 1 172 387 - -
Apr4g0205 426 ProSitePatterns Protein kinases ATP-binding region signature. 92 120 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0205 Apr-Chr4 1712266 1716859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0205 1 382 Glycoside Hydrolase AT3G07070 41.645 5.74e-94 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Apr4g0205 PK_Tyr_Ser-Thr 7.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0205 - - gmx:100813060 766.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0205 4 1712266 1716859 Apr4g0205 4 1712266 1716859 ECH