Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0200 ATGAATGCCGAGGAGAATCTTGTTACGGATGAAGATGGAGGGGATGACTATTACAAGCGCAGCAAGGGATTGAATAAAGAATATAAAGATAATGCATGGGCAGATCATCGAGTGGAAGTTAAAAAAGGTGGCGGGGAAGTTGTATGTTATAAATGCTTCCATGGAGGAACACTGCTATGTTGCTGTGGAAAAGGATGTGAAAGGAGGTACCATCCCTCTTGTGTGGATCCTCCTCTCAATTACATTCCTCCAGGGTTTTGGCATTGTATCTGGTGCGTTAAGAAAAAGATTGAGCTTGGCATGCATTCTGTTTCTAAAGGAATGGAATCCATATTGGATTCTAGAGAAGTGGTTTCAAACAATAAAGTGATGCATATGGAGTACTTTGTCAAGTATAAGGGCCTTGCTCATGCACACAACCGCTGGATTCCAGAAACACTATTGCTTCTTGAGGCTCCTAAGCTTTTGGCAAAGTTTAAGAAGAAAATGAAGGTTATCAGGTGGAAAAGAGATTGGAGTATACCCCACCGCTTGCTACTAAAAAGGGAAATTGTATTATCAAAACAAAATGACCAACATTATGATGGGCATGATAACAATGATTCAATTTGCCATTATGAGTGGCTTGTAAAATGGACTGGTCTTGGTTATGATGATGTTACATGGGAATTAGATGGTGCTGCATTTTTGACATCACCTGAGGGCAGGAAACTCATAGATGATTATGAAAGTCGTCGGAAGAGAGCAGATAGACGGTCAAAATATCATTTTGAAGCTAATGAGGAGAGCGAAACCTCCTTTGCAGAATTATCAAGGTTGCCATTCAGTGATTCACCTGGTTTTTATTATAACCAGCATTTGGGTTATGTGAACAAGCTTCGCATGTATTGGCACAAATGTCGAAGTGCTGTCACTGTAGATGATCAAATTGACCAGGAGCGGGTTATGAAGGTGATTTTGTATATATTATCTTTGAATTGTAATGTGAAGAGGCCTTTTCTCATCATCTCAACTTTTAATGCCCTCTCTGTATGGGAAACAGAGTTCTTACATTTGGCACCATCTGCCAATCTTGTAGTTTACAAGGGAAACAAAGATGTACGGAGTAGCATCAGGGCATTAGAGTTTTTTAGTGAAGATCATGACATCTTATTTCAAATATTGTTGACATCTTCTGATATCGTTGTTGAGGATTTACATGCACTAAGATGCATTCAATGGGAAGCAATAATAATTGATGAATGCCAGCGATCTAGAATTTTAGGACATTTTGACCATATCAAGATTCTAAAAGCTGAAATGAGGCTCCTTCTTGTTAGTGGACAAATCAAGGAAGATCGAGCTGATTATGTCAAACTGCTTTCATTCCTTAAGTCTGGACATCATGGGTCAAATATTGCTCAAATGGAAAATTACTCTGATAGCATTTCCAATTTGAAGAACCAATTGGAACAATATGTTTTATTTAAGTGCAATACAGGCTACACTAGGTTTGTAGAGTATTGGGTTCCTGCCCACCTTTCTAGTTTGCAGCTTGAGCAGTATTGTTCAATGCTGCTTTCAAACTTAATGTTGTTATGCTCAGGCCAAAAATCCGACTCTGTTGATGCTCTCCATGACCTTATTATCTCAACAAAGAAGTGCTGTGACCACCCTTTTCTCCTGGACCAGTCACTGCATAATTTTGTTACTGAAGGTCTACCAGTTCAAGAGCATTTAAATATTGGAATAAAAGCAAGTGGAAAATTACAACTTCTTGAAAAAATCCTTTTGGAAGCAAGAAGTCATGGGTTAAGAGTATTAATATTATTTCAGTCAACTGGTGGTCATAGAACGATTGGGGATATTTTGGATGATGTTCTCTGTCAGAGATTTGGTAAAGATTGCTATGTACGGTATGGTAGAGGTTATATCCCATTAAAGAAGCAAGCTGCTTTAGACACATTTAATGATAGAGAAAGTGGAAAATTTGTCTTCTTGATGGAAAGCCGTGCTTGTCTCCCTAGTGTTAAACTTTCCTCCGTGGATACTGTTATTTTTTTTGACAGTGATTGGGACCCACAGAATGACTTAAGAGGCCTACAAAGGATGTCTATCAGCTCACAGTTCAAACAGTTAACCGTTTTAAGATTGTACTCATATTTCACTGTTGAAGAAAAGGTTTTAATGCTTGCAAAAGATGGCATAGCTTTGGAAAGCAATATGCAGTTGATTAACCAGAGTACTTGTCATGCCCTGTTAAAATGGGGTACTTCCTATCTGTTCAATAAGCTTGATGACTTACATGCCAGTGTTACCTCAATCTCTACTACAGACATCTCTGATCATTCAATTCTAGGTGATGTAATCTGTGAATTATCATCTGAATTGATTAGTGGTGGTGGTGGTGATGATTCCTGTTGTCATGAATGGTCATTCATATCGAGAGTACAGCAGAATGGAGGGGAATATGCAAGGAACATTTTATTACTAGGAGAGAGATTAATTAAGAAATTGGGCTGTGAGCCATGTGCCTTTTCCTGGAGTGATCTCCTTGAAGGAAGGCATCCTCGATGGAAATTTGTGTCTGTTTCATCTCAGAGGATCAGGAAAACAGTCACACATTTTGATCAAATACTTAAATATTCTGAAAGTGAAAATGATGCCATTATAGGAAAGAGGACAGTGTCCAAGGATAATGTTGATCCCAATAGGAGGAAATTGTCCAAGGATAATGTTGATCCCATCAGGAGGAAAGTGTACAAGGTTAGTCTTGATATCCAGAGGAGAAAAGTGTCCAAGGATAATGTTGGTCCTAAAGGGAGGAAAATGACCAAGGTTAAAGTTGACCCCAAGAGGAGGAAGATGTTCACTGATACTGTTGATACAGAGGGGAGGAAAGTGTCAAATCATGTCATTGGTCCTAAGGCTAAGAAGGTATTCAAGGATATTGTCAATTCCAAAGGCAGGAAAGTGCCCAAGAATGCTTTTGACTCCAAATATATGAAAACAAGGTGGAAGAGCAAGAAGAGTCTAAGTGTTGTCAATAGGGCAATTAAATCAAATGGTAATGCCAATGGCTTGTCTAACGTACCTGATTCCATGGTGCATCCTTTGACCGATGAAATTAAAGGAGCAAGCACTATAAACATGCTATTTTCAGAGAAAAAGAAATTGCTTGACATGCGGAAGGGCATCACATTCTTGTCAAAGCCAGATATATCAGGTCTTTGTGATGTTCTACAATTTTCGAAAAATGTCAAGGTTGTTGCCATGAGGATTCTTGAGCACTTATTCAAATATTACAACATTAATTGTGAAGAAGTTTCTACGGTGCAGGCTTTTGAAATATCTGTGTGTTGGCTAGCAGCTTATTTTTCAAAACACAAGATTGATAGGAAATATTCACTTTTCCTGGCGAAACTGTACTTGAATTTTGATTGCAAGGAAGAGGAAGCAGCCAATGTTTACTCTGAACTGTGGAAGCATATGAAGGATTTTTCAAGTTGTTTACAAAATGGGTTTTTTGAGAAATGTAATATAAATGGCGCTTCAGACTCCAAGACACCTGAGCTGAAAGATTTGACACCGGAGAAGCAGAAGGATTTTCAAAGTTCTCATGATTTAAAACTTGTGACATCTGCCACAAATGAACATGATCATCAAAGGAAATCTCCCACACAAGACCAGACTTATCCTCATGAAATTTGGTTATATCAGAAGACACCTCATAGTATGCCTGTGGAAACAGATGCTATCTCCATGGAATGTGACTCAGAAGATGACAGAATTCATGCTATGACCTCAATAACAGCAGAAGTTTCATCCCTTGAGCACTGGAGTAATGATGTCAAACCTGTTACAGATTCTTTGGGGAGACAAAGTCTTGTTAGAAGTACACAGATTACAGATGGAAAAGTTTCTGAAGAGCTTCAAAGTTCAGTGAATGAAGTGGTTACTATTGACAAAGTTATGAATATGTCTACTCATCCTGTGCAACCTGACAGTGCTAAGACAGATGCTGTAACTAGCTTTAGTACTGTTGTGCCTGGGGTCAGAAAGTGCTACACTGTAACGAGTCCTGTATGTGGTGAGTCAATTACTTTGGAATTTGCTGAGACTGACTTACCCATGCAACCATCACATGCAAATTTATGCCCATTGCCTCAGATTACAGTTTCTCCTAGTACAGTCATGCCTCTAGATAATGTTTCTTACCATACTAGTGAAGATCATTGCAATGGCCTTGTTGAACTAGTTAACTCTTCCTATGTTTCACCTGTGATACTTCAACCCTCTACCAGTGTGCCCATGGATGAAAATACCATGCATGTACCACACAGCATTACTAATCCTGGATATATGAACACTGATTATTTTCAAGCTCTCTCTGTGACATCTGAAATGTCCCATGTTGCCTACCCAGACCCACTACTAATTGAAATGGAGAAAATAGAAAAGGTGAAGGAAGAAGCCTTCAAGATACATGAGCAAAAAATATTGCAGCTCAAATCTGACTTTGAAAAGGAGCTTGAAAAGTTGGGTGAAAAGTACAGGATGTTGCTTCAGAATGTCAATACTGATGTAGAACTAAAGAAAATGGAACTTGAGACAGAGTGTAAATTAGTTTTAATGAACAAGGTATTAGCTGAAGTTTGGATGCAGAAGTTTGATAGTTGCAAAAGAGCTGTGGAACCGTGCACAGAACAAGTGGCAATGCCTAGTTCTCCTTTGACTGCTCAAAGTCTTGAACAATTTATAGAACGTCCACCCATACTTCTCCCGTCCTTGTCCACTTCGACGTCGGTGCCGGATCCACCAACAACCGTTCCAGAAATCAACCCAGTTGGAGCATGCTTTGATTCCATTGTTCAGTTGTGCAGCGATATTCATGATAGCTGTGATTTACAATCCCTGTCCCCACCTCATAGAGACTCTGCAGCTGCCTCATATTATCCAGTACCTCTCATGTCAAATCAATGGAGTGGAATATCAGACCAGCCATTGCCACACAGTTGA 4998 0.3922 MNAEENLVTDEDGGDDYYKRSKGLNKEYKDNAWADHRVEVKKGGGEVVCYKCFHGGTLLCCCGKGCERRYHPSCVDPPLNYIPPGFWHCIWCVKKKIELGMHSVSKGMESILDSREVVSNNKVMHMEYFVKYKGLAHAHNRWIPETLLLLEAPKLLAKFKKKMKVIRWKRDWSIPHRLLLKREIVLSKQNDQHYDGHDNNDSICHYEWLVKWTGLGYDDVTWELDGAAFLTSPEGRKLIDDYESRRKRADRRSKYHFEANEESETSFAELSRLPFSDSPGFYYNQHLGYVNKLRMYWHKCRSAVTVDDQIDQERVMKVILYILSLNCNVKRPFLIISTFNALSVWETEFLHLAPSANLVVYKGNKDVRSSIRALEFFSEDHDILFQILLTSSDIVVEDLHALRCIQWEAIIIDECQRSRILGHFDHIKILKAEMRLLLVSGQIKEDRADYVKLLSFLKSGHHGSNIAQMENYSDSISNLKNQLEQYVLFKCNTGYTRFVEYWVPAHLSSLQLEQYCSMLLSNLMLLCSGQKSDSVDALHDLIISTKKCCDHPFLLDQSLHNFVTEGLPVQEHLNIGIKASGKLQLLEKILLEARSHGLRVLILFQSTGGHRTIGDILDDVLCQRFGKDCYVRYGRGYIPLKKQAALDTFNDRESGKFVFLMESRACLPSVKLSSVDTVIFFDSDWDPQNDLRGLQRMSISSQFKQLTVLRLYSYFTVEEKVLMLAKDGIALESNMQLINQSTCHALLKWGTSYLFNKLDDLHASVTSISTTDISDHSILGDVICELSSELISGGGGDDSCCHEWSFISRVQQNGGEYARNILLLGERLIKKLGCEPCAFSWSDLLEGRHPRWKFVSVSSQRIRKTVTHFDQILKYSESENDAIIGKRTVSKDNVDPNRRKLSKDNVDPIRRKVYKVSLDIQRRKVSKDNVGPKGRKMTKVKVDPKRRKMFTDTVDTEGRKVSNHVIGPKAKKVFKDIVNSKGRKVPKNAFDSKYMKTRWKSKKSLSVVNRAIKSNGNANGLSNVPDSMVHPLTDEIKGASTINMLFSEKKKLLDMRKGITFLSKPDISGLCDVLQFSKNVKVVAMRILEHLFKYYNINCEEVSTVQAFEISVCWLAAYFSKHKIDRKYSLFLAKLYLNFDCKEEEAANVYSELWKHMKDFSSCLQNGFFEKCNINGASDSKTPELKDLTPEKQKDFQSSHDLKLVTSATNEHDHQRKSPTQDQTYPHEIWLYQKTPHSMPVETDAISMECDSEDDRIHAMTSITAEVSSLEHWSNDVKPVTDSLGRQSLVRSTQITDGKVSEELQSSVNEVVTIDKVMNMSTHPVQPDSAKTDAVTSFSTVVPGVRKCYTVTSPVCGESITLEFAETDLPMQPSHANLCPLPQITVSPSTVMPLDNVSYHTSEDHCNGLVELVNSSYVSPVILQPSTSVPMDENTMHVPHSITNPGYMNTDYFQALSVTSEMSHVAYPDPLLIEMEKIEKVKEEAFKIHEQKILQLKSDFEKELEKLGEKYRMLLQNVNTDVELKKMELETECKLVLMNKVLAEVWMQKFDSCKRAVEPCTEQVAMPSSPLTAQSLEQFIERPPILLPSLSTSTSVPDPPTTVPEINPVGACFDSIVQLCSDIHDSCDLQSLSPPHRDSAAASYYPVPLMSNQWSGISDQPLPHS* 1666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0200 1665 ProSitePatterns Zinc finger PHD-type signature. 49 92 IPR019786 -
Apr4g0200 1665 ProSiteProfiles Chromo and chromo shadow domain profile. 106 171 IPR000953 -
Apr4g0200 1665 MobiDBLite consensus disorder prediction 1184 1199 - -
Apr4g0200 1665 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 585 746 IPR001650 -
Apr4g0200 1665 ProSiteProfiles Zinc finger PHD-type profile. 46 95 IPR019787 -
Apr4g0200 1665 CDD SF2_C_SNF 580 697 - -
Apr4g0200 1665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 325 470 IPR027417 -
Apr4g0200 1665 Gene3D - 1467 1549 - -
Apr4g0200 1665 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1435 1655 - -
Apr4g0200 1665 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 48 1339 - -
Apr4g0200 1665 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 99 IPR013083 -
Apr4g0200 1665 SUPERFAMILY Chromo domain-like 205 245 IPR016197 -
Apr4g0200 1665 SMART chromo_7 171 247 IPR000953 -
Apr4g0200 1665 SMART chromo_7 106 164 IPR000953 -
Apr4g0200 1665 Coils Coil 1497 1517 - -
Apr4g0200 1665 Pfam Chromo (CHRromatin Organisation MOdifier) domain 109 162 IPR023780 -
Apr4g0200 1665 SMART PHD_3 48 93 IPR001965 -
Apr4g0200 1665 Gene3D - 286 497 IPR038718 -
Apr4g0200 1665 MobiDBLite consensus disorder prediction 1180 1200 - -
Apr4g0200 1665 Gene3D - 498 732 IPR027417 -
Apr4g0200 1665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 498 733 IPR027417 -
Apr4g0200 1665 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 48 1339 - -
Apr4g0200 1665 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 1435 1655 - -
Apr4g0200 1665 Gene3D - 167 245 - -
Apr4g0200 1665 Pfam SNF2-related domain 317 553 IPR000330 GO:0005524|GO:0140658
Apr4g0200 1665 SUPERFAMILY Chromo domain-like 65 166 IPR016197 -
Apr4g0200 1665 Gene3D - 108 165 - -
Apr4g0200 1665 ProSiteProfiles Chromo and chromo shadow domain profile. 180 254 IPR000953 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0200 Apr-Chr4 1665448 1684539 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Apr4g0200 SNF2_N 5.5e-09 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0200 - K11643 gmx:100813574 1873.98