Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0195 ATGATAATTATGGACACTATTAAAGGAAAGGTGGAAAAGTGTTTGGATCCTCAACTATGGCATGCTTGTGCGGGAGGGATGGTGCAAATGCCACTGGTGAATGCTAAAGTGTTCTACTTCCCTCAAGGCCATGCTGAGCATGCATGTGGACCCGTGGACTTCAGGGCTGGCTCCAAAATTCCACCTTTCATTCAATGTAGAGTGGCAGCTATCAAATACATGGCTGATCCTGAGACAGATGAGGTGTATGCAAAGCTTAGCCTTGTTCCTATGAACAACAATGAAGCTGATTTTGAGGATGATGGTGTTGGAGGCATCAATGGATCTGAAACTAAGGATAAACCCCCTTCCTTTGCTAAAACCTTGACTCAATCTGATGCCAACAATGGTGGTGGTTTTTCTGTTCCTAGGTATTGTGCTGAGACAATTTTTCCTCGTTTGGACTATTCAGCAGACCCTCCTGTTCAGAACATCCTGGCTAAAGATGTTCATGGAGAAACATGGAAATTTAGGCACATTTATAGGGGCACGCCGCGGCGGCATCTGTTGACAACAGGGTGGAGTACTTTTGTTAATCACAAGAAGCTTGTTGCTGGTGATTCAATTGTGTTTTTGAGAGCAGAAAATGGTGATCTATGTGTTGGAATTCGAAGGGCTAAAAAGGGAATTGGTGGCGGACCTGAGACATCGTCGGGGTGGAATTCAGTAGGGGGAATTTGTCCTTTACCTTATGGAGGATTTTCTTCCTTTTTGAAGGATGAGGATAACCAATTCATGAGGAATGGTAATAGCAATGTGTTGAGTCCAAGTGCAAACTTGATGGGTAAGGGGAAAGTGAGGCCTGAAGCCGTTATTGAAGCTGCAACTCTTGCTGCCAATATGCAACCCTTTGAGGTTGTTTACTACCCTCGAGCAAGTACTCCAGAGTTTTGTGTTAAAGCATCTTTAGTTAGATCGACATCGCAGATTAGGTGGTGTCCTGGAATGAGGTTCAAGATGCCCTTTGAAACTGAGGATTCTTCGCGGATAAGTTGGTTTATGGGAACTATATCTTCTGTTCAAGTTGCTGATCCAAGATGGCCTGATTCCCCTTGGAGACTTCTCCAGGTCACATGGGATGAACCAGAGTTACTTCAAAATGTAAAAAGGGTGAGCCCGTGGCTAGTTGAAATTGTATCAAACATGCCAAGCATCCTTTCCCCTTTCTCACCACCAAGGAAGAAATTGAGATTCCCTCAGCCCCCAGATTTCCCACTCGATGGCCAGATTTCAATGCCAACATTTCCTAGCAACTTTCTAGGTCCTAATAATCCATTTGGTTTTTTACCTGAAAGTACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTATTAGTTATGGGATATCCTTATCAAATCTCCACCACAATAAACACACAGGTCTATTTCAGGCTGGTTTCCCACCACTTGATCACGCTGCTTCACCGATGAGGGTCTCCAATAATCCACCACTGCTAAAAGCCAGCACAAATGAAAATGTCTCCTGCTTATTATCCATGGAAAATTCTACTCAATCTTCAAAGAAAGTGGATGGTTTCAAGGCACCCCATCTGATGCTTTTTGGCCAAAAAATTCTCACTGAGCACCAAATTTCTCTGAGAAACTCTACTCGCACAGTCTCTCCAGTTATTACTAGTTCATCTGATGGAAATGCTGATAAAGTGACTAATTTTTCAAATGGTTCCTGTTCGGCACTTCATCCACAACTCTCCTCTTGTGAGGGGTTCCGGTGGTTTATGGATCACCACAAAGAAACTAGTTTAGAGACAGGTCAGTGTAAAGTTTTTATGGAATTAGAAGATGTAGGCCGGACTATGGACCTATCATTGCTTGGATCTTATGATGAATTGTACAAAAAACTAGCTGACATGTTTGGCATAAAAAAATCTGAGGTGCTAAGTCATGTGCTTTACCGTGATGTAACTGGGGCAGTCAAGCACATTGGAGATGAAGCATTTAGTGACTTCACTAGAACAGCAAGGAGGTTGACCATTCTAATGGATTCCAGCAGTGACAATGGGGGAGTGTAG 2067 0.4359 MIIMDTIKGKVEKCLDPQLWHACAGGMVQMPLVNAKVFYFPQGHAEHACGPVDFRAGSKIPPFIQCRVAAIKYMADPETDEVYAKLSLVPMNNNEADFEDDGVGGINGSETKDKPPSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGPETSSGWNSVGGICPLPYGGFSSFLKDEDNQFMRNGNSNVLSPSANLMGKGKVRPEAVIEAATLAANMQPFEVVYYPRASTPEFCVKASLVRSTSQIRWCPGMRFKMPFETEDSSRISWFMGTISSVQVADPRWPDSPWRLLQVTWDEPELLQNVKRVSPWLVEIVSNMPSILSPFSPPRKKLRFPQPPDFPLDGQISMPTFPSNFLGPNNPFGFLPESTPAGMQGARHAISYGISLSNLHHNKHTGLFQAGFPPLDHAASPMRVSNNPPLLKASTNENVSCLLSMENSTQSSKKVDGFKAPHLMLFGQKILTEHQISLRNSTRTVSPVITSSSDGNADKVTNFSNGSCSALHPQLSSCEGFRWFMDHHKETSLETGQCKVFMELEDVGRTMDLSLLGSYDELYKKLADMFGIKKSEVLSHVLYRDVTGAVKHIGDEAFSDFTRTARRLTILMDSSSDNGGV* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0195 688 ProSiteProfiles PB1 domain profile. 602 685 IPR000270 GO:0005515
Apr4g0195 688 Pfam Auxin response factor 287 369 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Apr4g0195 688 PANTHER AUXIN RESPONSE FACTOR 10 679 - -
Apr4g0195 688 SUPERFAMILY DNA-binding pseudobarrel domain 113 220 IPR015300 -
Apr4g0195 688 MobiDBLite consensus disorder prediction 105 125 - -
Apr4g0195 688 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Apr4g0195 688 Gene3D - 116 220 IPR015300 -
Apr4g0195 688 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Apr4g0195 688 SMART B3_2 118 220 IPR003340 GO:0003677
Apr4g0195 688 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 679 IPR044835 GO:0003677|GO:0006355|GO:0009725
Apr4g0195 688 Gene3D - 324 397 - -
Apr4g0195 688 CDD B3_DNA 116 218 IPR003340 GO:0003677
Apr4g0195 688 Gene3D - 600 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0195 Apr-Chr4 1593587 1597982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0195 3 685 B3 DNA Binding Superfamily AT4G30080 58.177 0.0 746
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Apr4g0195 B3 3.6e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0195 - - tcc:18597960 1071.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0195 4 1593587 1597982 Apr8g1973 8 30358325 30361547 ECH
Apr4g0195 4 1593587 1597982 Apr4g0195 4 1593587 1597982 ECH
Apr4g0195 4 1593587 1597982 Apr2g2198 2 27160873 27164628 ECH
Apr4g0195 4 1593587 1597982 Apr3g1355 3 28061870 28066976 ECH