Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0193 ATGGCAAAAGATATGGAAATTGCGGCAGAGAGTGGGTTGGCACACAAAGACTACCACGACCCTCCTCCCACCCCATTCTTCGACGCCACCGAACTCTCCAAGTGGTCCTTCTACAGAGCCCTCATCGCCGAGTTCGTCGCCACCCTCCTCTTCCTCTACGTCACCATCCTCACCGTCATCGGTTACAATCAGCAGACCGACGGCACCAACCCCTGCAACGGTGTTGGCATCCTCGGTATCGCTTGGGCCTTCGGAGGCATGATTTTCGTCCTCGTTTACTGCACCGCCGGCATATCTGGGGGTCACATAAACCCGGCCGTGACGTTTGGGTTGTTTCTGGCGAGGAAGGTGTCGCTGGTGAGAGCAATTTTGTACATGGTGGCTCAGTGCTTGGGTGCCATTTGTGGTGTTGGGTTGGTGAAGGGCTTTCAGAAGAGTTACTACAACAGGTATAAAGGTGGTGCTAACATGCTCTCTGCAGGCTACAGCAAAGGCACTGGCTTGGGCGCTGAGATTATTGGCACCTTTGTTCTTGTCTACACTGTCTTCTCTGCCACCGATCCCAAGAGAGTCGCCAGAGATTCCCATGTTCCCGTGTTGGCACCACTTCCAATTGGGTTTGCGGTGTTCATGGTTCACCTCGCCACCATCCCTATCACTGGCACTGGCATCAACCCTGCTAGAAGCCTTGGTGCTGCTGTTATATACAACAGTGAGAAGGCATGGGATGACCAGTGGATCTTTTGGGTTGGACCCTTCATCGGTGCTGCTCTTGCTGCATTCTACCACCAGTCTGTGTTGAGAGCTCAAGCGGCTAAGGCTCTGGGATCTTTCAGGAGTTCCTCTAACCTGTGA 855 0.5368 MAKDMEIAAESGLAHKDYHDPPPTPFFDATELSKWSFYRALIAEFVATLLFLYVTILTVIGYNQQTDGTNPCNGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYMVAQCLGAICGVGLVKGFQKSYYNRYKGGANMLSAGYSKGTGLGAEIIGTFVLVYTVFSATDPKRVARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNSEKAWDDQWIFWVGPFIGAALAAFYHQSVLRAQAAKALGSFRSSSNL* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0193 284 SUPERFAMILY Aquaporin-like 31 268 IPR023271 -
Apr4g0193 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 281 IPR034294 -
Apr4g0193 284 TIGRFAM MIP: MIP family channel proteins 43 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr4g0193 284 PANTHER AQUAPORIN PIP2-4-RELATED 1 281 - -
Apr4g0193 284 CDD MIP 39 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr4g0193 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Apr4g0193 284 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr4g0193 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr4g0193 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr4g0193 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr4g0193 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr4g0193 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr4g0193 284 Gene3D Glycerol uptake facilitator protein. 24 284 IPR023271 -
Apr4g0193 284 Pfam Major intrinsic protein 31 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0193 Apr-Chr4 1565611 1567223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0193 1 284 Major Intrinsic Protein MIP AT2G37170 80.488 7.08e-171 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0193 K09872 - gmx:100807883 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0193 4 1565611 1567223 Apr8g1978 8 30424736 30427832 ECH
Apr4g0193 4 1565611 1567223 Apr4g0193 4 1565611 1567223 ECH
Apr4g0193 4 1565611 1567223 Apr2g2205 2 27223398 27225145 ECH
Apr4g0193 4 1565611 1567223 Apr3g1362 3 28137679 28139658 ECH