Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0190 ATGGGCAACATCTCAAGCAACGGTGGCGGCAACCACCGTCGCCGACATAGTGGCGGTACGAGGCGGAGTCATCCGCCACCACCTCCGCCTCCGCCGGTGACGCCGCAACCCGAAATCACGGCGAATCCATTTGTGTACCCTGGTGCTGCACCGTACCCGAACCCTCCCGTACATTACCCTCAGTACCATTACCCCGGTTACTATCCTCCTCCGGTGACGATGCCTCATCATCATAATCATCACCACCACCATCATCATCAGCATCCGCACATGGACCCGGCATGGGTTGCAGGGCGTTACCCTTGTGGACCGGCCATGCCTCAACCGGCACCTTTTGTTGAGCATCAGAAGGCTGTTACCATAAGGAACGATGTGAACATCAAGAAGGAAACCCTTAGGATTGAACCTGATGAGGAAAACCCTGGCCACTTCCTTGTCTCGTTTACGTTTGATGCTACCGTTTCTGGGAGCATCACCATATATTTCTTTGCAAAAGAAGGTGAAGGCTGCGTCCTTGCACCAATGAAGGAAAACCATATCGCACCACTGACTGTGCATTTCCAGGAAGGTCTTGGCCAGAAGTTTAGACAGACAGCTGGAACTGGTATTGATTTTTCAGCTTTTGAGGAGTCAGAGTTGCTGAAAGTGGGTGACATGGATGTCTACCCTCTAGCAGTAAAGGCAGATGCATCCCCTGGTAACCATGATGAGGCAAATGAAACTCCAACATCTGGTAACACAAACTCTCAGATTACCCAAGCGGTGTTTGAGAAGGAGAAAGGAGAATTTCGAGTGAAAGTTATTAAGCAGATCTTGTGGGTGAATGGAATGAGGTATGAGCTGCAGGAGATATATGGTATTGGAAATTCAATGGAGAGTGACTTGGATGAGAATGATCAAGGAAAAGAATGTGTCATCTGCTTGTCAGAGCCTCGTGATACAATTGTCCATCCCTGCCGACATATGTGCATGTGTAGTGGATGTGCCAAGGTTTTGAGGTTCCAGACAAATAGATGCCCAATTTGCAGACAACCGGTTGAGAGGCTGTTGGAGATAAAGAAAAACAAAGAAGGAAAATGGAATTTATGTATGACTTTTGCGGTTCAACATGAATAG 1116 0.4839 MGNISSNGGGNHRRRHSGGTRRSHPPPPPPPPVTPQPEITANPFVYPGAAPYPNPPVHYPQYHYPGYYPPPVTMPHHHNHHHHHHHQHPHMDPAWVAGRYPCGPAMPQPAPFVEHQKAVTIRNDVNIKKETLRIEPDEENPGHFLVSFTFDATVSGSITIYFFAKEGEGCVLAPMKENHIAPLTVHFQEGLGQKFRQTAGTGIDFSAFEESELLKVGDMDVYPLAVKADASPGNHDEANETPTSGNTNSQITQAVFEKEKGEFRVKVIKQILWVNGMRYELQEIYGIGNSMESDLDENDQGKECVICLSEPRDTIVHPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKKNKEGKWNLCMTFAVQHE* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0190 371 PANTHER MAHOGUNIN 1 357 IPR045194 GO:0061630
Apr4g0190 371 MobiDBLite consensus disorder prediction 1 46 - -
Apr4g0190 371 MobiDBLite consensus disorder prediction 22 38 - -
Apr4g0190 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 352 IPR013083 -
Apr4g0190 371 Coils Coil 367 371 - -
Apr4g0190 371 Pfam Zinc finger, C3HC4 type (RING finger) 302 348 - -
Apr4g0190 371 SUPERFAMILY RING/U-box 303 349 - -
Apr4g0190 371 SMART ring_2 304 342 IPR001841 -
Apr4g0190 371 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 303 343 IPR045195 -
Apr4g0190 371 MobiDBLite consensus disorder prediction 228 249 - -
Apr4g0190 371 ProSiteProfiles Zinc finger RING-type profile. 304 343 IPR001841 -
Apr4g0190 371 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0190 Apr-Chr4 1551887 1569099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0190 38 323 C3H Transcription Factor Family AT3G09770 57.191 4.47e-101 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0190 - - aprc:113862864 689.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0190 4 1551887 1569099 Apr4g0190 4 1551887 1569099 ECH