Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0188 ATGAAAAACAACTCAAATACTAAAACTGTAATACACAAGCTCAGTTTAAAATTTTGCAACATTAGTTCAGATATTGAAAAGTCTTCCATCCTAGCACTTGAAAGTTCACTCCCAGAGCCGCTGCAAAAGCCTATGAATTCAAGGACATTATCACCTAGAGGGAAGAAGATATCATCCTTACCTGTAACCCCAATTGCTCAGTCAAATCTTGAGTGTGAGCATGGAGGGAACAATAACATTGCTACTCCAGCAACACATAAAAAGGGACAGCAATTACCAATGCATCGTTCTAATTCAGTGCCCGTGATTACCAAAGATGGCACCACGTATGCAGGTGGCACGATTCGTATTGTTCCTAGCACACTACAGTTGGCTGGGAGTATTGCCACAACATCTATGAAGTCTCCACCTTCCCATACTGTTGAAAATGAGGATGAGGAAAATATTCTTGAAGAAGAAGCTGTCTGCAGAATTTGTTTGATTGAATTGGGAGAAGGTGTCGACACCCTTAAAATGGAGTGCAGTTGCAGAGGTGTACTTGCACTAGCGCACCAAGATTGTGCAGTTAAATGGTTTAGCATTAAAGGCAACAGAACATGTGATGTGTGCAAGCAAGAAGTTCAGAACCTACCTGTCACTCTTTTACGGGTTCCAAATGTCCATGCACTTAACTTGACAAGGAGCACAAATCAACAATACAGGGTTAGGCAAAATGTTCCCATTCTTGCCATCATCAAGATGCTGGCATACTTTTGTTTTCTTGAGCAGCTACTTGTTTCAAGTATGGGATCTGGTGCCATTATCATATCTCTCCCATTTTCTTGTATACTGGGTCTACTTGCAAGCATGACGTCCACAACAATGGTGAGGAGAAAACACATTTGGGCTTATGCAGTTGTCCAGTTTATCATGGTGGTTCTTGCTGGACGTCTTTTCTATTCATTGATTCATAAGCAAGCTGTTCTATCTATCCTACTTGCTGCATTTACTGGGTTTGGAGCTGTTATGTGTGGAGCTTATATTCTTATTGAGTTTCTGAAGTGGAGAAGACAATGGCTTGGTGAGTTGAACCAACAGCACGGTTCCCAAGAGGTGGTACAGCCTCCTCAATCATACTCATCTGCAGCAACTCATCAAGCTCAGACTGACTCTCAACACCATCAAAATAATGTGAGAGACACTGCAGTGCGTGTGAACTGA 1200 0.42 MKNNSNTKTVIHKLSLKFCNISSDIEKSSILALESSLPEPLQKPMNSRTLSPRGKKISSLPVTPIAQSNLECEHGGNNNIATPATHKKGQQLPMHRSNSVPVITKDGTTYAGGTIRIVPSTLQLAGSIATTSMKSPPSHTVENEDEENILEEEAVCRICLIELGEGVDTLKMECSCRGVLALAHQDCAVKWFSIKGNRTCDVCKQEVQNLPVTLLRVPNVHALNLTRSTNQQYRVRQNVPILAIIKMLAYFCFLEQLLVSSMGSGAIIISLPFSCILGLLASMTSTTMVRRKHIWAYAVVQFIMVVLAGRLFYSLIHKQAVLSILLAAFTGFGAVMCGAYILIEFLKWRRQWLGELNQQHGSQEVVQPPQSYSSAATHQAQTDSQHHQNNVRDTAVRVN* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0188 399 SUPERFAMILY RING/U-box 152 207 - -
Apr4g0188 399 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 2 392 - -
Apr4g0188 399 MobiDBLite consensus disorder prediction 376 399 - -
Apr4g0188 399 SMART ringv_2 155 204 IPR011016 GO:0008270
Apr4g0188 399 Pfam RING-variant domain 156 203 IPR011016 GO:0008270
Apr4g0188 399 ProSiteProfiles Zinc finger RING-CH-type profile. 148 210 IPR011016 GO:0008270
Apr4g0188 399 PANTHER OS02G0165000 PROTEIN 2 392 - -
Apr4g0188 399 MobiDBLite consensus disorder prediction 40 59 - -
Apr4g0188 399 CDD RING_CH-C4HC3_MARCH 156 204 - -
Apr4g0188 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 211 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0188 Apr-Chr4 1540054 1543681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0188 142 210 C3H Transcription Factor Family AT2G37950 37.838 1.90e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0188 - - aprc:113861843 787.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0188 4 1540054 1543681 Apr4g0188 4 1540054 1543681 ECH