Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0184 ATGTTTAATCCTATCGGTTTTTCGCTGTTGACCATCGATTCGGTGGCGTACAGGGGATTCTTCTACACATTCTTCATACTCAATTTCGTTTTGCTTTGTCAACTCCTTCTCCTTCAACCTCTCGTTTCTGCTTCAGATGGAAAACCTGGAAATGCTGCTGAGTTGTTTGAGAGGGCATCTCAAAGCATAAAAGTGAAGCATTATACCGAGGCACTTGATGATCTAAATGCTGCAATAGAAGCAGACCCAACCCTTTCGAAAGCATACCTTTTCCGAGCATCAGTTCTTCGTCAATTATGCAGATATGAGCAATCTGAGAAGAGCTACAAAAAGTTTCTGGAGTTAAAACATGGAGATTCAGCTGCAGAAAAGGAGCTCTCTCAACTATTGCAGGCTCAAAGTGCCCTAGAAACAGCTCAGTCCCTCTATGATTCAGGAAATTTCACAAAATCTCTGGAATATATTGATAAAGTTGTTCTTGTCTTTTCTCCCGCTTGCACCAAGGCTAAGCTTCTTAAAGTGAAGTTGTTGATAGCTGATAAAGAGTATGAGGTTGCAATTGCTGAGTCTGGTTTTATTCTCAAAGAAGATGAAAATAATTTAGAGGCATTGTTGTTACGTGGTCGTGCATATTACTATTTAGCTGATCATGATGTTGCCACAAGGCATTTCCAGAAAGGTCTCCGCCTAGATCCAGAGCACAGTGAACTAAAAAAAGCATATTTTGGATTGAAAAATCTACTCAAAAAGAGTAAAAGTGCTGAAGATAATGCAAGTAAGGGTAAACTACGTCTGGCAGTGGAGGAATTCAAAGGTGCAATTGCTGTTGACCCTAATCATCTTGCACACAATGTACATCTTCATCTTGGCCTATGTAAAGTGCTAGTCAAGCTTGGCAGAGGAAAAGATGCCTTGGACAGTTGTAGTGAAGCTCTTAAGATCAATGAAGAGCTTGTTGAAGCTCTTGTTCAGAGAGGAGAAGCTAAACTATTGACAGAGGATTGGGAGGGAGCTGTGGAGGATCTGAAATCAGCTGCTCAAAAATCTCCTCAGGATATGAGTATCCGTGAAGCAGTAATCAGGGCTGAAAAAGCTTTAAAGATAAGCAAACGCAAGGACTTCTACAAAATTTTGGGAATTTCGAAAACTGCTTCTGCTGCTGAGATTAAACGTGCCTACAAGAAACTTGCCTTACAATGGCACCCAGATAAGAATGTTGACAAAAGGGAAGAAGCAGAGGCTAAATTCCGAGAAATTGCTGCTGCATATGAGGTTCTCAGCGATGAAGACAAACGCACAAGATATGACAGAGGGGAAGACCTTGAAGAGATGGGAATGGGCAGTGGCGGTTTCAACCCTTTCGGTGGTGGGGGGCAACCGTTTACCTTTACTTTTGAGGGTGGTTTTCCAGGTGGATTTGGTGGAGGCTTTCCTGGTGGGTATGAATTCCATTTTTGA 1458 0.4198 MFNPIGFSLLTIDSVAYRGFFYTFFILNFVLLCQLLLLQPLVSASDGKPGNAAELFERASQSIKVKHYTEALDDLNAAIEADPTLSKAYLFRASVLRQLCRYEQSEKSYKKFLELKHGDSAAEKELSQLLQAQSALETAQSLYDSGNFTKSLEYIDKVVLVFSPACTKAKLLKVKLLIADKEYEVAIAESGFILKEDENNLEALLLRGRAYYYLADHDVATRHFQKGLRLDPEHSELKKAYFGLKNLLKKSKSAEDNASKGKLRLAVEEFKGAIAVDPNHLAHNVHLHLGLCKVLVKLGRGKDALDSCSEALKINEELVEALVQRGEAKLLTEDWEGAVEDLKSAAQKSPQDMSIREAVIRAEKALKISKRKDFYKILGISKTASAAEIKRAYKKLALQWHPDKNVDKREEAEAKFREIAAAYEVLSDEDKRTRYDRGEDLEEMGMGSGGFNPFGGGGQPFTFTFEGGFPGGFGGGFPGGYEFHF* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0184 485 ProSitePatterns Nt-dnaJ domain signature. 416 435 IPR018253 -
Apr4g0184 485 ProSiteProfiles TPR repeat profile. 201 234 IPR019734 GO:0005515
Apr4g0184 485 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 10 485 IPR044620 -
Apr4g0184 485 Gene3D Tetratricopeptide repeat domain 41 370 IPR011990 GO:0005515
Apr4g0184 485 CDD DnaJ 373 428 IPR001623 -
Apr4g0184 485 Gene3D DnaJ domain 371 479 IPR036869 -
Apr4g0184 485 ProSiteProfiles dnaJ domain profile. 373 439 IPR001623 -
Apr4g0184 485 Pfam Tetratricopeptide repeat 202 234 IPR013105 -
Apr4g0184 485 Coils Coil 409 429 - -
Apr4g0184 485 SUPERFAMILY TPR-like 48 368 IPR011990 GO:0005515
Apr4g0184 485 SMART dnaj_3 372 431 IPR001623 -
Apr4g0184 485 Pfam DnaJ domain 373 436 IPR001623 -
Apr4g0184 485 SMART tpr_5 201 234 IPR019734 GO:0005515
Apr4g0184 485 SMART tpr_5 285 318 IPR019734 GO:0005515
Apr4g0184 485 SMART tpr_5 52 85 IPR019734 GO:0005515
Apr4g0184 485 SMART tpr_5 319 352 IPR019734 GO:0005515
Apr4g0184 485 SMART tpr_5 86 119 IPR019734 GO:0005515
Apr4g0184 485 Pfam Tetratricopeptide repeat 87 116 IPR019734 GO:0005515
Apr4g0184 485 PRINTS DnaJ domain signature 375 393 IPR001623 -
Apr4g0184 485 PRINTS DnaJ domain signature 393 408 IPR001623 -
Apr4g0184 485 PRINTS DnaJ domain signature 411 431 IPR001623 -
Apr4g0184 485 PRINTS DnaJ domain signature 431 450 IPR001623 -
Apr4g0184 485 SUPERFAMILY Chaperone J-domain 367 477 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0184 Apr-Chr4 1520597 1525633 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0184 369 436 C2H2 Transcription Factor Family AT1G74250 47.222 1.08e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0184 K09523 - gmx:100804685 752.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0184 4 1520597 1525633 Apr4g0184 4 1520597 1525633 ECH