Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0183 ATGCAAACGATGCCCGATGACCCCTTTTCACTATCCACTTCCATCGTAGGAATTGCCATAGAGCAAAACACAAACCCTAACCCTAATCCCCTTCCTGCTGCCACTAAGAAGAAAAGAAATCTACCAGGAACACCAGATCCAGATGCTGAGGTCATTGCTCTTTCTCCAAAGACTCTCATGGCGACGAACCGTTTCATCTGTGAAATATGCAACAAAGGCTTCCAAAGGGACCAGAACCTTCAGCTTCACAGAAGGGGTCACAACCTTCCATGGAAGCTACGACAAAGGTCCAACAAAGAGGTTCGAAAGAAGGTATATATATGTCCAGAGAAGACGTGCGTCCACCATGACGCTGCAAGGGCACTCGGCGACCTCACCGGAATAAAGAAGCATTACAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGTGAAAAGTGCTCCAAGAAATACGCAGTTCAATCTGATTGGAAAGCTCACACCAAAACTTGTGGCACTAGAGAATATAAGTGTGATTGTGGTACCCTCTTCTCCAGGAAGGACAGCTTTATAACTCACAGGGCTTTCTGCGATGCTTTAGCTGAAGAGAGTGCGAGACTCACGTCAGTTACTACGACAAATATAAATTTTAAGAACGAAGATGGAACCGTGATGAATGCACAGCATGGTTTGTCATCACGTGGATTAATCACTGGCCTTGGAATGCAAAATGTTCCACAATTTGGTCCACACGGGTTTCGTATAATGGGCATGAGTGCAGGTCAACAAAGGCCAAACTTGTCACTATGGTTGAACCAAGGAAATCCTCAACCACTTGATGTGTCACTATCATCATCATGTTCTTCAGGTTTTCCTGATGTTGTGCAAATGGCACAAGCTAACAATGCCTTAGTTGGTTCTTCTTCAATATTCTCCAATTTTGGAATGCATGCTTCCAATTCTTCTAATCCAAACCTTTCCTTGTCGCCACTAACGAAAAAGGGTGAAGGTGGAGCTTTAGATTTGGCATCTATGTATTCTGAGAGTCAAAGCAATACTTCAAATTCAACTTCACCAATGTCAGCCACTGCCCTTTTGCAGAAGGCAGCACAAATGGGATCCACCAGAAGCAGCACCAACCCTTCGATTTTCAGTAGTAGTTTTGGAGTAATGAGCTCATCCTCCACCCAAACAACTAGTCTCAATAGCAATGCAAAACAAAGCTGTGATGAACTTAACCAAGCCTTTCAGAATATGAAGCAACATGAGAATAACTTCAATGCAATAAGCAATGCAACTATGCTGGGTAGTTGTACTAACTTTAACTCATTGACGCATTCATCAAACGGTCTTGATCAGTTCCTGATGCAAACCACCAATGTGGAACCAAGTGAGGCTATGAAGTTGAAACTCCACCATGGTTCAAACATCGTGGAACATAACTTGACAAGAGATTTTCTTGGCATGGATGTAGGTGGACATGCATTCCTACCCCAAGAGCTTGCAAAGTTTGCTTCATTAGGCTCTTCAATGGGTTTGAACCAATTCACTCATCAATGA 1536 0.4349 MQTMPDDPFSLSTSIVGIAIEQNTNPNPNPLPAATKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHDAARALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVTTTNINFKNEDGTVMNAQHGLSSRGLITGLGMQNVPQFGPHGFRIMGMSAGQQRPNLSLWLNQGNPQPLDVSLSSSCSSGFPDVVQMAQANNALVGSSSIFSNFGMHASNSSNPNLSLSPLTKKGEGGALDLASMYSESQSNTSNSTSPMSATALLQKAAQMGSTRSSTNPSIFSSSFGVMSSSSTQTTSLNSNAKQSCDELNQAFQNMKQHENNFNAISNATMLGSCTNFNSLTHSSNGLDQFLMQTTNVEPSEAMKLKLHHGSNIVEHNLTRDFLGMDVGGHAFLPQELAKFASLGSSMGLNQFTHQ* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0183 511 PANTHER ZINC FINGER PROTEIN JACKDAW 7 500 IPR033243 GO:0003700
Apr4g0183 511 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Apr4g0183 511 Gene3D Classic Zinc Finger 43 120 - -
Apr4g0183 511 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
Apr4g0183 511 Coils Coil 394 424 - -
Apr4g0183 511 MobiDBLite consensus disorder prediction 21 47 - -
Apr4g0183 511 Pfam Zinc-finger double-stranded RNA-binding 65 87 IPR022755 -
Apr4g0183 511 SMART c2h2final6 65 87 IPR013087 -
Apr4g0183 511 SMART c2h2final6 106 136 IPR013087 -
Apr4g0183 511 SMART c2h2final6 141 161 IPR013087 -
Apr4g0183 511 Gene3D Classic Zinc Finger 127 202 - -
Apr4g0183 511 SUPERFAMILY beta-beta-alpha zinc fingers 64 161 IPR036236 -
Apr4g0183 511 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0183 Apr-Chr4 1513007 1515303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0183 1 500 IDZ Gene Family AT5G03150 46.739 1.62e-134 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr4g0183 zf-C2H2_jaz 7.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0183 K25870 - gmx:100812495 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0183 4 1513007 1515303 Apr4g0183 4 1513007 1515303 ECH