Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0181 ATGGGGCATAGGCACTTATATAACGCATCTCCATTATTTGAGGGTAGGACTAGCACTTCTGAGAATGGTTCTTTTATTTATCCTGCAGAAAATATGTCTATAGATAGCAATTCGTTCCCCTCACATTGGAACTCTTCCACAAGATCAAATGGATATGCATCCTCAAGTCTCAACATTGATGTAGCCCCTCATCAACCAGATGCATCAGGCACTTCCAGTGATCATTTTATGCATTCATCTAGTGCTGGAGCCTTCTTTGCAGTGTCTGAAAATCATGTAAACCAGCCTCCTCCTTCCAATTATGACAGACAAACATTTCATGTTGATGGTGGTTTTATTGATCTTACAATGGGAAGCGGACGAGGGCCTCAAAAGCGCAAGAGCCCTGGAATTCCTTCAGTCTTTGAGAGAGGTAGTACAAGTAGATACTTTAATGCTGGGAGTTCAACTGATCATCCTATGCCTTCAGAATTAAGGCAGGAGAAGCCAAACATTGATTCTCAATATATGCCCTGGGATCATTTTACTATGACCCCCACATTCAGAGGTTCTGGCCTTTCAATAAAGGGTGAGGGTTCACTCAGGAATGTGAGGAGCCGTTCTTCACTTGATTTGGAATCCAACCTGGCTAGAACCCATTTATCAGGCAATCATTCACACAACTACCCTTCTGTCCCACCACCAGTTGACCATTCTAGCATGGTGGACCTTTCAGGTCAGACTTCTGCCACTTTGACAAGGGATTGGAACCAAATGAACATATCTCCTGCTAATGGACGGGTGTTATTGTCAGATACAAATGCTTTTGGTCTTGAGACAAATCATTTCCTTGTCGGAAGTGGTGCTGCTGCTAGTAATGCTTCTGTAGATGTTGGGGGTTTCCATCATGAATTTGGTACAAGCAGAAATCCTACAGCTCCTCAATGTTTTCATAATAATCAGACTCAGACTACTAGAGGAATTCGAAGCAACTATTCTCAGAGATCTACTCCAGCTTTTAGAGCTTCTTCAAGCTTGCGCTTGGGACATGTGACATCTTTGGATGATGGATTGCCTATGGTAGCTGAAAGCTACTCTTCTAGACATCCAAGGCCATTGAGCACCATTGGCTGGCGTAATGGTGATAGAAATGGGAGGTCAAGAATTTCCAGTGAAAGATATCGTTCTTTGGCTGAGGAGGGTGGTCTCCATGATCGATTTTCCTCTGAGGGTTTCATGGTTGTTGAGCGCGCATCACTGTATGGTTCCAGGAATATGCTTGATCAGCACCGAGACATGAGGATGGACATAGATAACATGAGTTATGAGGAACTACTAGCACTTGGAGAGAGGATTGGCTTTGTAAACACAGGATTGTCTGAGGACTTGCTTTCCAAGTGTTTGACTGAAACAATATATTGTTCATCTGAGCAAAGTCAAGACGAAGGAAGCTGTGTAATCTGTCTGGAAGAGTACAAGAACATGGACGATGTTGGGACACTTAAAACTTGTGGACATGACTACCATGTGAGCTGCATTAAAAAGTGGTTATCTATGAAGAAACTATGTCCAATCTGCAAATCCTCGGTTTTGCCCGAGGATACGAAGGATAAATAA 1596 0.4305 MGHRHLYNASPLFEGRTSTSENGSFIYPAENMSIDSNSFPSHWNSSTRSNGYASSSLNIDVAPHQPDASGTSSDHFMHSSSAGAFFAVSENHVNQPPPSNYDRQTFHVDGGFIDLTMGSGRGPQKRKSPGIPSVFERGSTSRYFNAGSSTDHPMPSELRQEKPNIDSQYMPWDHFTMTPTFRGSGLSIKGEGSLRNVRSRSSLDLESNLARTHLSGNHSHNYPSVPPPVDHSSMVDLSGQTSATLTRDWNQMNISPANGRVLLSDTNAFGLETNHFLVGSGAAASNASVDVGGFHHEFGTSRNPTAPQCFHNNQTQTTRGIRSNYSQRSTPAFRASSSLRLGHVTSLDDGLPMVAESYSSRHPRPLSTIGWRNGDRNGRSRISSERYRSLAEEGGLHDRFSSEGFMVVERASLYGSRNMLDQHRDMRMDIDNMSYEELLALGERIGFVNTGLSEDLLSKCLTETIYCSSEQSQDEGSCVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSMKKLCPICKSSVLPEDTKDK* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0181 531 CDD RING-H2_TTC3 477 520 - -
Apr4g0181 531 MobiDBLite consensus disorder prediction 117 158 - -
Apr4g0181 531 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 527 IPR045191 GO:0061630
Apr4g0181 531 ProSiteProfiles Zinc finger RING-type profile. 478 520 IPR001841 -
Apr4g0181 531 MobiDBLite consensus disorder prediction 134 154 - -
Apr4g0181 531 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 527 - -
Apr4g0181 531 SMART ring_2 478 519 IPR001841 -
Apr4g0181 531 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 446 525 IPR013083 -
Apr4g0181 531 SUPERFAMILY RING/U-box 468 525 - -
Apr4g0181 531 MobiDBLite consensus disorder prediction 40 76 - -
Apr4g0181 531 Pfam Ring finger domain 477 520 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0181 Apr-Chr4 1479941 1488253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0181 1 530 C3H Transcription Factor Family AT2G37150 43.393 1.48e-117 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0181 - - gmx:100803627 936.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0181 4 1479941 1488253 Apr4g0181 4 1479941 1488253 ECH