Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0178 ATGGCCGATGACTTCGATTTCGCGGACCAAGTCCCTCCTTCCTTCGACCGTGTGGGAAACGTGATTAAGGATTCTGGATCCCAAGGGTTCAACCCAGGCTTAATAGTTCTTCTGGTTGTAGTTGGGTTGCTATTGGCATTCCTTATTGGAAATTTTGTGCTCTACACGTATGCACAGAAGACCCTCCCTCCCAGGAAAAAGAAGCCGGTCTCAAAGAAGAAGATGAAGAAGGAGAGACTGAAGCAAGGCATCTCTGCACCTGGAGAGTAG 270 0.4852 MADDFDFADQVPPSFDRVGNVIKDSGSQGFNPGLIVLLVVVGLLLAFLIGNFVLYTYAQKTLPPRKKKPVSKKKMKKERLKQGISAPGE* 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0178 89 Pfam DNA binding protein S1FA 26 89 IPR006779 GO:0003677|GO:0005634|GO:0006355
Apr4g0178 89 PANTHER DNA-BINDING PROTEIN S1FA1-RELATED 3 89 - -
Apr4g0178 89 MobiDBLite consensus disorder prediction 62 89 - -
Apr4g0178 89 MobiDBLite consensus disorder prediction 65 79 - -
Apr4g0178 89 PANTHER DNA-BINDING PROTEIN S1FA2 3 89 IPR006779 GO:0003677|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0178 Apr-Chr4 1460269 1463533 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF S1Fa-like Apr4g0178 S1FA 4.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0178 - - gmx:100499820 150.214