Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0174 ATGGCCAACGACTCGTCGTTTTTGTTCGCCGGTATTCGTTTCGACAGAAAGAAGTTCGGCTCCGATATTGCGAGGTTCCAGAAAAAAGATAGTGATAATAATTCAGTGAATGTTTGGAGCGCCGCTGAAGATGAAAGCGAGAAAATAAGGGAAACCGTGGAAGAGATAACAGCGTCGACGAAGAAGAGGAAACGCAAGGGAACTTCTTCCGAAACAGTCGAAGGATTCAGTGTGTTCAGAAATTCGACATCGGTGACGCAATCGAACGATGATGAGGTTCGAGCTGATGAAGAGTCCGTTAAGCTGAATAAGAAGAAGGAACAAAATAGGCAACTCGAGCGGGATGCTATCTTCAGAAAGAAGCACAACATTCATGTCTCTGGCTATAACGTGCCGTCTCCGCTTCTAAACTTTGATGAGTTGAAATCGAGATATAAATGTCAGTCGTATTTATTGCGCAATCTGAAAGAACTTGGATTCAGGGAGCCAACACCTATTCAAAGGCAGGCTATTCCAGTACTTTTACATGGTCGTGAATGCTTTGCTTGTGCACCAACTGGCTCTGGGAAAACCTTTGCATTCGTGTGTCCAATGCTTATGAAGCTGAAGGCTGCCTCAAAAGATGGCATTCGAGCTGTTATCATTTGTCCTACCCGTGAGTTATCTGCTCAAACATATCGAGAGTGCAAAAAGCTTGCTAAGGGAAAAAAATTTCGTATTAAGTTTATGACCAAACATCTTGCAAGAAATGCTGAATTTTCCAAAAATCCATGTGATATACTTATATCCACACCACTTCGATTACGCCTGGCTATCAAAAAGAAGAAGGTTGATCTCAGCAGGGTTGAGTATCTTGTCCTTGATGAATCCGATAAGCTATTTGAGCCTGAACTGTTCAAGCAGATTGATTCTGTTATCAAAGCATGCTCAAATCCCTCAATAATACGTTCACTGTTCAGTGCTACTTTACCTGATTTTGTTGAAGATCGAGCTCGAGAGCTCATGCATGATGCAGTTCGTGTAATTGTTGGTAGAAAGAATATGGCTTCGGAAACAATAAAGCAAAAATTGGTTTTTACTGGAAGTGAAGAAGGAAAACTTCTAGCAATTCGTCAAAGTTTTGCAGAGAGTCTAAATCCTCCAGTATTGGTCTTTGTCCAAAGCAAGGAGCGAGCCAAGGAGCTGTATGGTGAACTGGCATTTGACAACATTAGGGTTGATGTCATCCATTCTGACTTGTCTCAAGAAGAGCGGGAAAATGCCGTTGATAATTTCAGAGCTGGAAAAACATGGGTTTTGATTGCTACCGATGTAGTTGCTCGGGGCATGGATTTCAAAGGTCGTTCTGGTAGAGCGGGGAGGACTGGAGAAGCGATTACTTTTTACACGGAAGAAGACATTCCATTCCTACGGAATGTGGCTAATCTTATGGCAACATCAGGCTGTGACGTTCCATCTTGGTTCATGGAATTGCGCAAAAAGAAGTGGAAAAAGCACCGGCCCAAGAGAGATTCAATCTCAACCAAACCAGACCTATAA 1539 0.4263 MANDSSFLFAGIRFDRKKFGSDIARFQKKDSDNNSVNVWSAAEDESEKIRETVEEITASTKKRKRKGTSSETVEGFSVFRNSTSVTQSNDDEVRADEESVKLNKKKEQNRQLERDAIFRKKHNIHVSGYNVPSPLLNFDELKSRYKCQSYLLRNLKELGFREPTPIQRQAIPVLLHGRECFACAPTGSGKTFAFVCPMLMKLKAASKDGIRAVIICPTRELSAQTYRECKKLAKGKKFRIKFMTKHLARNAEFSKNPCDILISTPLRLRLAIKKKKVDLSRVEYLVLDESDKLFEPELFKQIDSVIKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLLAIRQSFAESLNPPVLVFVQSKERAKELYGELAFDNIRVDVIHSDLSQEERENAVDNFRAGKTWVLIATDVVARGMDFKGRSGRAGRTGEAITFYTEEDIPFLRNVANLMATSGCDVPSWFMELRKKKWKKHRPKRDSISTKPDL* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0174 512 SMART ultradead3 159 356 IPR014001 -
Apr4g0174 512 CDD SF2_C_DEAD 353 462 - -
Apr4g0174 512 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 171 341 IPR014001 -
Apr4g0174 512 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 352 512 IPR001650 -
Apr4g0174 512 Pfam Helicase conserved C-terminal domain 371 447 IPR001650 -
Apr4g0174 512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 344 IPR027417 -
Apr4g0174 512 Pfam DEAD/DEAH box helicase 164 328 IPR011545 GO:0003676|GO:0005524
Apr4g0174 512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 278 495 IPR027417 -
Apr4g0174 512 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 6 509 - -
Apr4g0174 512 Coils Coil 95 115 - -
Apr4g0174 512 Gene3D - 341 497 IPR027417 -
Apr4g0174 512 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 57 6 509 - -
Apr4g0174 512 SMART helicmild6 393 456 IPR001650 -
Apr4g0174 512 MobiDBLite consensus disorder prediction 90 106 - -
Apr4g0174 512 CDD DEADc_DDX52 151 344 IPR044764 GO:0003724|GO:0005524|GO:0030490
Apr4g0174 512 MobiDBLite consensus disorder prediction 85 106 - -
Apr4g0174 512 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 140 168 IPR014014 GO:0003724
Apr4g0174 512 Gene3D - 97 340 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0174 Apr-Chr4 1433976 1438954 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0174 134 485 Eukaryotic Initiation Factors Gene Family AT3G19760 27.733 2.13e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0174 K14779 - gmx:100800969 865.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0174 4 1433976 1438954 Apr4g0174 4 1433976 1438954 ECH