Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0171 ATGGGGAGGAAGGGAAATTGGTTTTCTACTGTAAGGAAAGCTCTCAGTCCTGATTCAAAGGAGAAGAAGGATCAGAAATCAAGTAAATCAAAGAAGAAATGGTTTGGGAAGCAAAAGTTGCAGACTGCACCCTCGTACTCAGAAACTGATAGAGCACCACCTCTTCCTCCACCTCCTCCACCAGAAGAAATTAAATTAACTGATATTGAAAATGAATACGGTCACAATCACGATCATGTTGTTGAAGTTGCAGCTGCCATGGATGTTGAGGAACCTGCTCCTGTTCCTGCCCCCTCTGTTCAGACAGCACCTGTTAGGGTTCAAGCTTCCACAATTGCTCGGTTTACCGGCAAACCAAAGGATGAAGTGGCAGCTATCAAGATTCAAACAGCTTTTCGGGGATACTTGGCAAGAAGAGCATTGCGGGCTTTAAGAGGGCTGGTCAGGTTGAAATTATTGATGGAAGGGCCCATTGTAAAACGCCAAGCCACAAGTACCCTACGTTCTATGCAGACATTAGCTCGCTTGCAATCTCAGATTCGTTCCAGGAGGATCAGAATGTTGGAGGAGAATCAGGCTCTGCAGAGACAGCTCTTACAGAAGCATGCAAAAGAGCTTGAGAGCATGCGGATCGGAGAGGAATGGGATGACAGCCTACAATCAAAGGAACAAATCGAAGCCAAGTTACTAAGCAAGTATGAGGCTGCTATGAGAAGAGAAAGAGCACTGGCTTATGCATTCACTCATCAGCAAAACTGGAAGAATTCATCAAGATCTATCAATCCAATGTTCATGGATCCAACCAATCCTACCTGGGGTTGGAGCTGGTTAGAACGATGGATGGCTGCTCGGCCTTGGGAGAGCCGTGGCCTAATGGATAAAGAGCCAAATGATCATTCATCCGTAAAAAGTTCAAGCCGCAACATTACTGTTGGAGAAATCAGCAAGTCATTTGCTCGTTTCCAGCTCAATTCTGAAAAGCATTCTCCAACAGCCAGCCAAAATCCTGGCTCACCAAGTTTTCAGTCCACTCCTTCCAAACCAGCTTCTGCAGTAGTTGCTAAGAAACTGAAGAAGGCAAGTCCAAGGGGCAGCTGGGTTATGGATGATGACTCCAAAAGCATGGTGAGTGTACAGTCAGACCGATTCCGGAGGCACTCAATTGCCGGGTCATCCGTGAGAGACGACGAGAGCCTTGCTAGCTCTCCATCTGTTCCAAGTTATATGGTGCCAACTCAATCTGCAAAAGCTAAGTCCAGGACACAAAGTCCATTAGCCACTGAAAATGGAAAAACAGAGAAAGGATCCTTTGGAACTGCAAAGAAGCGTCTTTCTTTCCCGGCTTCACCTGTCAAACCAAGGCGTCATTCAGGTCCGCCCAAGGTAGAAACTGTGGACAATGGTGTGGACAGTTGA 1416 0.4654 MGRKGNWFSTVRKALSPDSKEKKDQKSSKSKKKWFGKQKLQTAPSYSETDRAPPLPPPPPPEEIKLTDIENEYGHNHDHVVEVAAAMDVEEPAPVPAPSVQTAPVRVQASTIARFTGKPKDEVAAIKIQTAFRGYLARRALRALRGLVRLKLLMEGPIVKRQATSTLRSMQTLARLQSQIRSRRIRMLEENQALQRQLLQKHAKELESMRIGEEWDDSLQSKEQIEAKLLSKYEAAMRRERALAYAFTHQQNWKNSSRSINPMFMDPTNPTWGWSWLERWMAARPWESRGLMDKEPNDHSSVKSSSRNITVGEISKSFARFQLNSEKHSPTASQNPGSPSFQSTPSKPASAVVAKKLKKASPRGSWVMDDDSKSMVSVQSDRFRRHSIAGSSVRDDESLASSPSVPSYMVPTQSAKAKSRTQSPLATENGKTEKGSFGTAKKRLSFPASPVKPRRHSGPPKVETVDNGVDS* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0171 471 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 467 - -
Apr4g0171 471 PANTHER IQ-DOMAIN 5-RELATED 1 467 - -
Apr4g0171 471 Pfam IQ calmodulin-binding motif 124 142 IPR000048 GO:0005515
Apr4g0171 471 Pfam Protein of unknown function (DUF4005) 395 458 IPR025064 -
Apr4g0171 471 ProSiteProfiles IQ motif profile. 121 149 IPR000048 GO:0005515
Apr4g0171 471 MobiDBLite consensus disorder prediction 394 434 - -
Apr4g0171 471 MobiDBLite consensus disorder prediction 1 65 - -
Apr4g0171 471 SMART iq_5 120 142 IPR000048 GO:0005515
Apr4g0171 471 MobiDBLite consensus disorder prediction 325 349 - -
Apr4g0171 471 Gene3D - 106 147 - -
Apr4g0171 471 MobiDBLite consensus disorder prediction 325 471 - -
Apr4g0171 471 MobiDBLite consensus disorder prediction 50 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0171 Apr-Chr4 1416277 1420613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0171 1 471 IQD Protein Family AT5G03040 53.768 1.32e-150 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0171 - - gmx:100800080 688.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0171 4 1416277 1420613 Apr4g0171 4 1416277 1420613 ECH
Apr4g0171 4 1416277 1420613 Apr8g0463 8 3949744 3953254 PCT