Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0167 ATGGAGAATCCTCATTTTGCACACGCCCAATACGCTCGACAATCTTCGATAGTATTTGATGGGCATATAGTTGTAGAATATGCTCAAATAGTGATCAATCTAGGCAATAACATGGAGAATGGGTTTTGCCATACTTTGGCTACAATTGACACCTTTGTGGCTGTTTGTGTAGCCTACCGCAGTGAATGTGAGGGGTTGGAAAGGATATTCATGGCTACATTTTGTTTTCCCGCCATAAGAAAAAAAGTTTGCTCTCCAAACATCAACGGAAGGAAGCACCGCGAACGCGAAGGACGTCGATCGATCGGAAACGGGATGCACGGAACACCGGAAGTGACGGAGCAGAGGATCGGACCCGGATTCGGATCCATATCCATGGACCTACTCGGGTTACTGGATATACTCGGCATTTACTTTCCTCAGCAACTCTTCACCGTCGAAGAAACCTGGCTTAATCTCACTTCCGCTCTTCTTTCCTTCCTTTCTTCTTCGCCGGGCCAAAACCTCGCTTCTCAGGTGAAAAATGATCATGGAAACCATGTCTTGTCGCTTGACCTCCAGCAGTTCAAGCAAATATGTCATGTCGAGGAATTTTATGAAATGTTAATGGAGAAACCTAAAATTGCTCTCTCATGCATGAGTGCTGCGGTTCATAAGGTTTTGCTCTCCAAATGGGGGAGTGACAGCTCCGAGCTCGGTGCAAAAGTAGATATTCGACTTTATAACTGTCCCGAAACTATGATTGCGCTGAAGAACTTAAAAGCAGCATATATTGACAAGCTTGTCTCAGTGCGTGGTACTGCTGTGAAAGTCAGCACTGTCAGGCCCCTTGTAGTGGAAATGAGTTTTGATTGCAGCAAGTGTAAACAAACAATTATGCGTATCTTTCCTGATGGAAAATATTCTCCGCCATCAACTTGCAATTTGAATGGCTGCAAGAGCAAAATCTTCAACCCGTTGCGATCTACTGCTCAAACTATTGATTTTCAAAAAATAAGAGTTCAAGAATTATTAAAACCTGAAGACCATGAAGAAGGTCGAGTTCCCCGAACAGTAGAATGTGAGCTTACGCAAGATCTTGTTGATGCATGCATACCTGGAGATGTGGTGACAGTTACAGGAATTATCAGAGGAATTAACACTTACATGGATATTGGAGGAGGGAAGTCCAAAAACAGAAACCAAGGATTTTACTATTTGTATATTGAAACTGTATCCATAAAAAATTCGAAGTCACAGTCCATACCCGACGAATTGCAAGACTCTAACCCCAAAGCTAGACCGACTGAGCTGTTTGACTTGTTTTCATTTTCTTCAAAAGATTTAGAATTTGTCGTCAAGTTTGCGCAGGAGCACGGTTCAGATTTGTTTCGGCAAATCCTTCAATCTATATGCCCGTCCATCTACGGGCATGAGCTTGTTAAAGCTGGGATAACCCTGGCATTATTTGGTGGTGTACGAAAGCATTCTACGGATCAGAATAAGGTTCCTGTGAGGGGAGATATTCATGTCGTAATTGTTGGTGATCCTGGTCTCGGTAAGAGCCAATTGCTACAAGCAGCAGCAGCTGTTTCTCCACGCGGTATCTATGTCTGTGGTAATGCCACAACCAAAGCTGGCCTCACAGTAGCTGTAGTGAAGGATCCTATGACAAGTGACTATGCTTTTGAGGCTGGTGCTATGGTGCTGGCTGACAGTGGATTGTGCTGCATTGATGAGTTTGATAAAATGTCTTCAGAGCATCAGGCTTTACTGGAGGCAATGGAGCAACAGTGTGTCTCTATTGCAAAGGCGGGCTTAGTAGCAAGCTTATCATCCCGAACTTCTGTCTTAGCAGCTGCAAACCCCGTTGGTGGTCATTATAACCGGGCAAAAACTGTAAATGAAAATCTGAAAATGAGTGCTGCTCTCCTGTCCCGTTTTGATTTAATTTTCATACTGTTGGACAAACCTGATGAACAACTGGACAAGCGAGTCTCAGAGCACATTATGTCACTTCATGCTGGGAATGGACAACATTCACTGGCATTGAAAAAGCATCCACCTTCTGATTCAAGAGCTGCTGTATCACAGAATGCTGAAGGTGTAGACCTGGGGGTTAGATCGGGGTCTTTAAGTTCAAGGTTGAGACTTGACCCACAAAGAGACAACGATTTTGTTCCATTACCCGGTCAACTTCTTCGCAAATACATCGCTTATGCAAGGAGTTTTGTCTTTCCTAGGATGACCACGCCAGCAGCAGAAATCTTGCAAAAATTTTACCTAAAACTAAGAGATCATAATACTTCAGCTGATGGTACTCCTATTACAGCTAGGCAGCTGGAAAGTCTAGTAAGGCTAGCTGAAGCTCGGGCTCGGTTGGACTTGAGAGTAGAAATAACGGCCCAGGATGCAATGGATGTGGTTGAAATCATGAAGGAATCCCTCTATGATAAGTATGTTGATGAGCATGGTATCGTGGATTTTGGTCGAAGTGGGGGGATGAGTCAACAGAAAGAGGCAAAACGCTTTCTAAATGCCCTCAACAAGCAATCAGAACTGGAACAAAAAGATTGCTTTTCAGTATCTGAAATATACAGTCTGGCAGATAGGATTTCTTTGAAAGTTCCTGATATTGACTCTTTCATCGATAATTTAAACAGCATTGGTTATCTACTCAAAAAAGGACCAAAGACATACCAGGTTTTATCCTCTTCATATTCACGAAGCCAATCGTTTAGGACAAGGGGCTAA 2733 0.4329 MENPHFAHAQYARQSSIVFDGHIVVEYAQIVINLGNNMENGFCHTLATIDTFVAVCVAYRSECEGLERIFMATFCFPAIRKKVCSPNINGRKHREREGRRSIGNGMHGTPEVTEQRIGPGFGSISMDLLGLLDILGIYFPQQLFTVEETWLNLTSALLSFLSSSPGQNLASQVKNDHGNHVLSLDLQQFKQICHVEEFYEMLMEKPKIALSCMSAAVHKVLLSKWGSDSSELGAKVDIRLYNCPETMIALKNLKAAYIDKLVSVRGTAVKVSTVRPLVVEMSFDCSKCKQTIMRIFPDGKYSPPSTCNLNGCKSKIFNPLRSTAQTIDFQKIRVQELLKPEDHEEGRVPRTVECELTQDLVDACIPGDVVTVTGIIRGINTYMDIGGGKSKNRNQGFYYLYIETVSIKNSKSQSIPDELQDSNPKARPTELFDLFSFSSKDLEFVVKFAQEHGSDLFRQILQSICPSIYGHELVKAGITLALFGGVRKHSTDQNKVPVRGDIHVVIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDPMTSDYAFEAGAMVLADSGLCCIDEFDKMSSEHQALLEAMEQQCVSIAKAGLVASLSSRTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLIFILLDKPDEQLDKRVSEHIMSLHAGNGQHSLALKKHPPSDSRAAVSQNAEGVDLGVRSGSLSSRLRLDPQRDNDFVPLPGQLLRKYIAYARSFVFPRMTTPAAEILQKFYLKLRDHNTSADGTPITARQLESLVRLAEARARLDLRVEITAQDAMDVVEIMKESLYDKYVDEHGIVDFGRSGGMSQQKEAKRFLNALNKQSELEQKDCFSVSEIYSLADRISLKVPDIDSFIDNLNSIGYLLKKGPKTYQVLSSSYSRSQSFRTRG* 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0167 910 CDD MCM8 460 808 - -
Apr4g0167 910 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 466 815 IPR027417 -
Apr4g0167 910 Gene3D - 434 818 IPR027417 -
Apr4g0167 910 SUPERFAMILY Nucleic acid-binding proteins 178 380 IPR012340 -
Apr4g0167 910 Pfam MCM OB domain 250 378 IPR033762 -
Apr4g0167 910 Gene3D - 277 327 - -
Apr4g0167 910 Gene3D - 250 379 IPR012340 -
Apr4g0167 910 PANTHER DNA HELICASE MCM8 130 905 - -
Apr4g0167 910 Pfam MCM P-loop domain 454 667 IPR001208 GO:0003677|GO:0005524|GO:0032508
Apr4g0167 910 SMART AAA_5 500 652 IPR003593 -
Apr4g0167 910 PRINTS Mini-chromosome maintenance (MCM) protein family signature 499 514 IPR001208 GO:0003677|GO:0005524|GO:0032508
Apr4g0167 910 PRINTS Mini-chromosome maintenance (MCM) protein family signature 559 573 IPR001208 GO:0003677|GO:0005524|GO:0032508
Apr4g0167 910 PRINTS Mini-chromosome maintenance (MCM) protein family signature 586 599 IPR001208 GO:0003677|GO:0005524|GO:0032508
Apr4g0167 910 PRINTS Mini-chromosome maintenance (MCM) protein family signature 610 622 IPR001208 GO:0003677|GO:0005524|GO:0032508
Apr4g0167 910 PRINTS Mini-chromosome maintenance (MCM) protein family signature 637 645 IPR001208 GO:0003677|GO:0005524|GO:0032508
Apr4g0167 910 MobiDBLite consensus disorder prediction 89 109 - -
Apr4g0167 910 Pfam MCM AAA-lid domain 726 809 IPR041562 -
Apr4g0167 910 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 130 905 IPR031327 GO:0003677|GO:0005524|GO:0032508
Apr4g0167 910 SMART mcm 246 810 IPR031327 GO:0003677|GO:0005524|GO:0032508
Apr4g0167 910 Coils Coil 571 591 - -
Apr4g0167 910 MobiDBLite consensus disorder prediction 673 693 - -
Apr4g0167 910 ProSiteProfiles MCM family domain profile. 456 663 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0167 Apr-Chr4 1386280 1396918 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0167 123 896 Core DNA Replication Machinery Family AT3G09660 71.907 0.0 1154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0167 K10737 - gmx:100784549 1359.36