Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0163 ATGGCAGCAGCAGCTCGCCCTATCGTCTCCGTTCAAACCCTAGAGGGCGAGGCAGCCCCCACCGTCCCACTCCCCGACGTCATGAAGGCCTCCATTCGCCCCGACATAGTCACCTTCGTCCACTCCAACATTTCCCGCAACGCTCGCCAACCCTACGCCGTCAGCAAGCGCGCCGGCCACCAAACCTCCGCCGAATCCTGGGGCACCGGCCGCGCCGTCTCTCGCATTCCTCGCGTTCCCGGCGGCGGCACTCACCGCGCCGGCCAGGGGGCCTTCGGCAACATGTGCCGCGGCGGCCGCATGTTCGCTCCCACCAAGATCTGGCGCCGCTGGCACCGCAAGATCAACGTCAACCAGAAACGTTACGCTGTTGTCTCCGCCATCGCGGCCTCCGCAATTCCCTCCCTCGTCCTCGCCCGCGGCCACCGCATCGATTCCGTCCCGGAGCTTCCCCTCGTGGTTAGCGACACCGTGGAAAGCGTCGAGAAAAGCAAGGAAGCCGTGAAAGTCCTGAAACAGATCGGAGCCTTGGCCGACGCAGAAAAAGCGAAAGATAGCCACGGAATTCGAGCCGGTAAGGGTAAAATGAGGAACCGTAGGTACATTTCACGCAAGGGCCCTTTAATCGTGTACGGAACCGAAGGTGCCAAAGCCGTTAAAGCCTTCCGGAACATTCCAGGCGTTGACGTGGCAAATGTTGATAGGCTTAACCTTCTGAAGTTAGCACCCGGTGGCCACCTTGGGAGGTTCGTTGTTTGGACCAAGTCCGCGTTTGAGAAGCTCGACTCCATTTATGGGTCCTTCGATAAGGTTTCCGAAAAGAAAAAGGGTTACCTCCTTCCCAGGTCCAAGATGGTTAACTCTGACTTGGCCCGGATCATTAACTCCGACGAGGTTCAGTCCGTTGTTAGGCCCATTAAGAAAGAGGTTAAGAGAGCCACTCTGAAGAAGAACCCTCTTAAGAACCTTAATGCTATGTTGAAGCTCAATCCCTATGCTAAGACTGCAAGGAGAATGTCCCTTCTCGCGGAGGCGCAGCGCGTTAAAGCTAAGAAGGAGAAGCTTGATAAGAAGCGCACCACTGTCTCTAAGGAGGAGGCTTCTGCTATCAAGGCTGCCGGAAAAGCGTGGTATCAAACCATGGTGTCCGACTCTGATTATGCCGAATTTGATAACTTTTCTAAGTGGCTGGGTATTTCTCAGTGA 1206 0.5614 MAAAARPIVSVQTLEGEAAPTVPLPDVMKASIRPDIVTFVHSNISRNARQPYAVSKRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAIPSLVLARGHRIDSVPELPLVVSDTVESVEKSKEAVKVLKQIGALADAEKAKDSHGIRAGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNIPGVDVANVDRLNLLKLAPGGHLGRFVVWTKSAFEKLDSIYGSFDKVSEKKKGYLLPRSKMVNSDLARIINSDEVQSVVRPIKKEVKRATLKKNPLKNLNAMLKLNPYAKTARRMSLLAEAQRVKAKKEKLDKKRTTVSKEEASAIKAAGKAWYQTMVSDSDYAEFDNFSKWLGISQ* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0163 401 Pfam Ribosomal protein L4/L1 family 22 262 IPR002136 GO:0003735|GO:0005840|GO:0006412
Apr4g0163 401 MobiDBLite consensus disorder prediction 52 69 - -
Apr4g0163 401 PANTHER 60S RIBOSOMAL PROTEIN L4 2 401 IPR045240 -
Apr4g0163 401 MobiDBLite consensus disorder prediction 52 91 - -
Apr4g0163 401 SUPERFAMILY Ribosomal protein L4 8 263 IPR023574 GO:0003735|GO:0005840|GO:0006412
Apr4g0163 401 Coils Coil 338 358 - -
Apr4g0163 401 ProSitePatterns Ribosomal protein L1e signature. 116 142 IPR013000 -
Apr4g0163 401 Gene3D - 3 304 IPR023574 GO:0003735|GO:0005840|GO:0006412
Apr4g0163 401 Pfam 60S ribosomal protein L4 C-terminal domain 276 348 IPR025755 -
Apr4g0163 401 PANTHER BNAC03G35890D PROTEIN 2 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0163 Apr-Chr4 1339320 1340974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0163 2 401 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 79.703 0.0 658
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0163 K02930 - gmx:100796712 717.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0163 4 1339320 1340974 Apr8g0452 8 3855428 3857809 PCT