Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0162 ATGAATAATATCAACAGTTCAAGTTGTCAATCAATGGCAATGGCGCCTTCAATTCCCACGAATGGGTCAGGGAAGAAGGTTAGAAAGCCTTATACTATTACCAAGTCTAGGGAAAGCTGGTCTGAAGAAGAGCATGACAAGTTTCTTGAAGCTCTTCAACTATTTGATAGAGATTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACGGTTATTCAGATTAGAAGTCATGCCCAGAAATACTTCTTGAAAGTTCAAAAGAATGGGACAATAGCACATGTTCCTCCTCCTCGTCCTAAGCGCAAAGCTGCTCATCCTTATCCACAAAAGGCACCCAAAAATGTTTTGGTGCCATTGCCAGCTTCCATGGCTTATGTTTCTTCCTCTAGTACCTTTCCACATGGTTATGCCACATGGGATGAAAATTCTTTGCGCACGAATGAAGGATCCAACAAATCAGTGCCCTGTCAGGATGGACTCACCGATCTTCATGGAAATGAAGCTCATATTGGATCAAAGGGAACAACACGAATTGGCCACAGTAGTCTTAGTGGTGTAGGGAATTCTACTAGAAAGCTTATTGAGATGCCAAAACAAGGGAAACAGGCATCGGTGCTTCAGGGTTTGCCAGATTTTGCTGAAGTTTACAGCTTCATTGGAAGTGTTTTTGATCCAGAAACAAAAGGCCATGTCCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTATTAATGAAAAACCTCTCTGTCAACTTGTCTTCCCCTGACTTTGATCCCATTAGGAAGGCCTTGTTATCGTACAATGTCATGACCAAGATTATAGGAGTTAACGAAGGAATTGACGTGAAGAAGCAGAGAAATGATGTATCATGTCAAACCACATGA 897 0.4069 MNNINSSSCQSMAMAPSIPTNGSGKKVRKPYTITKSRESWSEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTIAHVPPPRPKRKAAHPYPQKAPKNVLVPLPASMAYVSSSSTFPHGYATWDENSLRTNEGSNKSVPCQDGLTDLHGNEAHIGSKGTTRIGHSSLSGVGNSTRKLIEMPKQGKQASVLQGLPDFAEVYSFIGSVFDPETKGHVQKLKEMDPINFETVLLLMKNLSVNLSSPDFDPIRKALLSYNVMTKIIGVNEGIDVKKQRNDVSCQTT* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0162 298 MobiDBLite consensus disorder prediction 1 37 - -
Apr4g0162 298 SMART sant 36 84 IPR001005 -
Apr4g0162 298 ProSiteProfiles Myb-like domain profile. 32 82 IPR001005 -
Apr4g0162 298 Pfam Myb-like DNA-binding domain 37 82 IPR001005 -
Apr4g0162 298 MobiDBLite consensus disorder prediction 1 18 - -
Apr4g0162 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 86 IPR017930 -
Apr4g0162 298 CDD SANT 39 82 IPR001005 -
Apr4g0162 298 PANTHER SWI/SNF COMPLEX-RELATED 5 292 - -
Apr4g0162 298 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 35 84 IPR006447 GO:0003677
Apr4g0162 298 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Apr4g0162 298 PANTHER PROTEIN REVEILLE 8 5 292 - -
Apr4g0162 298 Gene3D - 40 87 - -
Apr4g0162 298 ProSiteProfiles SANT domain profile. 35 88 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0162 Apr-Chr4 1334872 1338357 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Apr4g0162 Myb_DNA-binding 1.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0162 - - gmx:100783482 471.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0162 4 1334872 1338357 Apr8g0451 8 3848897 3854297 PCT