Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0160 ATGCCGCCCAAGCAGCAATCCAAAGCTGATTTAGCGAAGAAGCAGAAGATCGTAGAGGACAAAACCTTCGGTCTCAAGAACAAAAACAAGAGCAAAAATGTTCAGAAATATGTTCAGAACCTCAAGCAATCCGTGCAGCCCAAGCCCGATGCTTCCAAAGTCGCTGCCAAGAAAAAGAAGGAGGAAGAGAAGGCCAAGGACAAGGAGTTAAATGATTTGTTCAAAATTGCTGTTAGTCAGCCTAAAGTGCCAGTTGGTGTTGATCCAAAGTCCATATTGTGTGAGTTTTTTAAAGTGGGGCAGTGTGCTAAGGGTTTCAAGTGCAAGTTCTCCCATGATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATTTATAGTGATACACGTGACCAGGCAGAAACGATGGAGGATTGGGATCAAGAGACCTTGGAGAAGGTGGTGGAGTCGAAGAAAACAGAGTATAATCAGAACAAACCAACTGACATAGTCTGTAAATACTTTTTGGAAGCAGTGGAGAAGAAGCAATATGGTTGGTTCTGGGTCTGCCCCAACGGGGGTAAGAGTTGCCACTATAGACATGCTCTCCCCCCCGGATATGTTTTAAAATCTCAAATGAAGGCTCTATTAGAGGAGGAAACTGAAAAAATAACAATAGAGGAGGAGATTGAAAATCAGCGTGCCAAAGTGGCAACTACAACTCCTATGACTCCTGAGTTATTCATGGAATGGAAGAAGAAGAAGATAGAAGAGAGAGATGCCAATTTGGCTGCAGAACAGGCGGAGAGGGCTAAGAATGATCGCATGAGTGGTCGTGAGCTATTTTTGTCAGATGCTAGCTTGTTTGTGGATGATGCTGAAGCATATGACAAGTACCAAAGAGAACCAGAATCTTATGTCACTGAACAGAATGCAAATGGGAATGCTGGTGATGAGGGTCCTAGTACCTCAACAGCTAGTGCTTATGCTGAAGATCCTGATGATGTTGATGTCAACGAAGACGATGATGATGATGAACTGGACATGGATGAGTTGAATGAATTGGAAGCAAGCTTATCTAAAACATCAATTCAAATAAAGGAGTAA 1086 0.4273 MPPKQQSKADLAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQSVQPKPDASKVAAKKKKEEEKAKDKELNDLFKIAVSQPKVPVGVDPKSILCEFFKVGQCAKGFKCKFSHDLNVQRKGEKIDIYSDTRDQAETMEDWDQETLEKVVESKKTEYNQNKPTDIVCKYFLEAVEKKQYGWFWVCPNGGKSCHYRHALPPGYVLKSQMKALLEEETEKITIEEEIENQRAKVATTTPMTPELFMEWKKKKIEERDANLAAEQAERAKNDRMSGRELFLSDASLFVDDAEAYDKYQREPESYVTEQNANGNAGDEGPSTSTASAYAEDPDDVDVNEDDDDDELDMDELNELEASLSKTSIQIKE* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0160 361 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
Apr4g0160 361 MobiDBLite consensus disorder prediction 298 322 - -
Apr4g0160 361 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 21 1 361 - -
Apr4g0160 361 Coils Coil 247 267 - -
Apr4g0160 361 SMART c3hfinal6 159 196 IPR000571 GO:0046872
Apr4g0160 361 SMART c3hfinal6 88 114 IPR000571 GO:0046872
Apr4g0160 361 Gene3D - 206 280 - -
Apr4g0160 361 MobiDBLite consensus disorder prediction 293 343 - -
Apr4g0160 361 Coils Coil 51 71 - -
Apr4g0160 361 Gene3D - 87 205 - -
Apr4g0160 361 Pfam DRG Family Regulatory Proteins, Tma46 216 295 IPR032378 -
Apr4g0160 361 MobiDBLite consensus disorder prediction 326 343 - -
Apr4g0160 361 MobiDBLite consensus disorder prediction 40 63 - -
Apr4g0160 361 Coils Coil 209 229 - -
Apr4g0160 361 SUPERFAMILY CCCH zinc finger 88 113 IPR036855 GO:0046872
Apr4g0160 361 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 361 - -
Apr4g0160 361 ProSiteProfiles Zinc finger C3H1-type profile. 159 197 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr4g0160 DFRP_C 2.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0160 - - gmx:100806617 593.964