Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0142 ATGGGGAAGGGAGGCGAAGATTATGGAAGAAGAGAGAAAGCGAGTTCTGAGACTTCAGACCGTGAAATCTTCAAAGCGTGGGCCAAGGACGTGCGTGAATGCGAGGAACACTATAAGGTGAGTGTGAAAAGGGGGTTGAGTCACGACGAGGTTGAGAATCGGCGCAAGATCTATGGCTTGAATGAGTTGGAGAAGCACGAGGGCCAGTCCATATGGAGTTTGATTCTTGAGCAGTTCAACGATACCTTGGTTCGGATTCTTCTCGCCGCCGCCATCATATCCTTCGTACTGGCTTGGTACGACGGCGATGAAGGCGGTGAGATGGAGATTACGGCGTTCGTGGAGCCTCTGGTGATATTCCTGATATTAATTGTAAACGCAATTGTTGGGGTATGGCAAGAGAGCAATGCGGAGAAAGCACTTGATGCGCTGAAAGAGATTCAGTCGGAGCACGCCGCCGTTATTCGAGATGGGGTGAAAATCCCTAGTTTGCCGGCGAAGGATCTCGTGCCTGGTGATATTGTGGAGCTTAAGGTTGGGGATAAGGTGCCTGCAGATATGCGGGTTGTGGAATTGATCAGCTCCACTCTGCGGTTGGAGCAGGGTTCCTTGACTGGAGAGAGTGAAGCGGTGAACAAGACAAACAAGCCGGTTGCTGAGGATGCTGATATTCAAGGCAAGAGGTGTATTGTTTTCGCCGGGACCACTGTTGTTAACGGGAATTGCATTTGCTTGGTCACTCAGACTGGCATGGAAACCGAGATTGGGAAGGTGCATAAGCAGATACACGTGGCGTCTCAGAGTGAGGAGGATACACCCTTGAAAAAGAAGCTTAATGAGTTTGGAGAGAATCTAACCCTGATAATTGGATTGATATGTATTTTGGTTTGGCTTATTAATGTAAAGTACTTCCTTACATGGGATTATGTGGATGGGTGGCCGAGAAACTTCAAGTTTTCATTTGAGAAGTGTACCTATTACTTTGAGATTGCTGTGGCGTTGGCTGTAGCTGCTATTCCAGAAGGTTTGCCTGCAGTCATCACTACCTGCCTTGCTCTAGGTACACGCAAGATGGCCCAGAAGAATGCCCTGGTTCGAAAGCTACCGAGTGTGGAAACGCTGGGTTGTACGACTGTGATTTGTTCGGATAAAACTGGTACATTGACTACAAACCAGATGGCTGTGTCAAAACTAGTAGCTTTTGGCCATAAGGTGGACAATCTGCGAGCCTTTAAGGTGGAAGGAACTACATACAATCCATCTGATGGTCAAATAGAGGACTGGCCAACAGGTGGATTGGATGCTAATCTTCAGATGATAGCGAAAATAGCTGCAGTTTGTAATGATGCTGGAGTCACACAGTCAGAGCATAAGTTTGTCGCCCATGGAATGCCTACCGAAGCTGCATTAAAGGTTTTGGTAGAGAAGATGGGCCTTCCTGAAGGATCCGAGCATAATGGATCAGCAAGCACAAGTACCTTGCTACGTTGTTGTCAATGGTGGAATGAGCATGACCGGCGGATTGCTACTCTTGAGTTTGACCGAGATAGGAAGTCAATGGGTGTTATTGTGGACTCTGGTGTAGGTAAAAATTCGCTGCTAGTTAAGGGTGCGGTGGAAAATGTGTTGGACAGAAGCTCTAAAATTCAGTTGCGTGATGGTTCTATTGTGAAACTAGACGATAATGCTAGGAATCTCATATTGCAAGCCCTTCATGAAATGTCAACTAGAGCATTGCGCTGCTTGGGATTTGCATACAAGGATGAGCTCACTGCATTTGAAGACTACAATGGTAATGATGATCATCCGGCTCACCAGCTTTTGCTTAATCCTTCAAACTATTCATCAATTGAAAGTGAACTTATTTTTGTTGGCTTGGTTGGATTGAGGGATCCACCTAGGGAGGAGGTATATCAAGCAATTGAAGATTGCCGAGCAGCTGGAATTTGTGTTATGGTAATAACTGGAGACAATAAGAACACTGCTGAAGCTATATGCCGTGAAATAGGTGTATTTTCACCTGATGAAGACATTAGTTCTAGAAGTTTAACAGGCAAAGATTTTATGGAAGTGCGTGATAAAAAATCCTATCTGAGACAGAGTGGTGGGCTTTTGTTTTCAAGGGCTGAACCTAGGCACAAGCAAGAAATAGTGAGGCTGCTCAAAGAGGAAGGGGAGGTGGTGGCCATGACTGGGGACGGTGTTAATGATGCACCAGCCTTGAAGCTTGCAGACATCGGTGTTGCAATGGGCATTGCAGGAACAGAGGTGGCCAAGGAAGCATCAGATATGGTGTTGGCAGACGATAATTTTAGTACAATTGTTGCTGCTGTTGGTGAGGGTAGATCTATCTACAATAATATGAAGGCTTTTATCAGGTATATGATCTCTTCCAATATTGGTGAGGTTGCTTCTATATTTTTAACAGCTGCACTAGGTATTCCTGAAGGATTGATACCCGTCCAACTTCTGTGGGTCAATCTTGTCACTGATGGGCCCCCTGCAACAGCTTTGGGATTTAATCCTCCAGATAAGGATATAATGAAGAAGCCTCCGCGTCGCAGTGATGACTCACTAATTAATTTGTGGATTTTATTCCGCTATCTGGTTATTGGAATTTATGTTGGATTAGCTACAGTTGGTGTCTTCATCATATGGTATACACATGGTTCCTTCTTGGGTATTGACCTTAGCGGGGATGGGCATACTCTGGTCACTTACTCCCAACTAGCCAATTGGGGTCAATGCTCCACGTGGCAGAACTTTACAGCTTCTCCATTCACTGCTGGTGCAAAAGTTATCTCTTTTGACAATGATCCTTGTGACTACTTCCAGACTGGTAAAGTCAAAGCTATGACACTGTCCCTTTCTGTGTTGGTAGCCATTGAAATGTTTAACTCTCTCAATGCCCTATCTGAAGATGGAAGCCTTTTGACGATGCCTCCTTGGGTCAACCCTTGGCTTCTTTTGGCAATGTCTATATCATTTGGTCTGCACTTTTTAATCTTGTACGTGCCATTCTTAGCACAAGTATTTGGTATTGTGCCCCTGAGCTTCAATGAGTGGCTTTTGGTTTTGGCTGTTGCATTTCCCGTCATTCTAATTGACGAGATTCTGAAATTTGTGGGAAGGTGTACAAGTGCGTCTCAAGCATCAAGTGCAAGATCAAAGCAAAAATCAGAGTAG 3186 0.4517 MGKGGEDYGRREKASSETSDREIFKAWAKDVRECEEHYKVSVKRGLSHDEVENRRKIYGLNELEKHEGQSIWSLILEQFNDTLVRILLAAAIISFVLAWYDGDEGGEMEITAFVEPLVIFLILIVNAIVGVWQESNAEKALDALKEIQSEHAAVIRDGVKIPSLPAKDLVPGDIVELKVGDKVPADMRVVELISSTLRLEQGSLTGESEAVNKTNKPVAEDADIQGKRCIVFAGTTVVNGNCICLVTQTGMETEIGKVHKQIHVASQSEEDTPLKKKLNEFGENLTLIIGLICILVWLINVKYFLTWDYVDGWPRNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVSKLVAFGHKVDNLRAFKVEGTTYNPSDGQIEDWPTGGLDANLQMIAKIAAVCNDAGVTQSEHKFVAHGMPTEAALKVLVEKMGLPEGSEHNGSASTSTLLRCCQWWNEHDRRIATLEFDRDRKSMGVIVDSGVGKNSLLVKGAVENVLDRSSKIQLRDGSIVKLDDNARNLILQALHEMSTRALRCLGFAYKDELTAFEDYNGNDDHPAHQLLLNPSNYSSIESELIFVGLVGLRDPPREEVYQAIEDCRAAGICVMVITGDNKNTAEAICREIGVFSPDEDISSRSLTGKDFMEVRDKKSYLRQSGGLLFSRAEPRHKQEIVRLLKEEGEVVAMTGDGVNDAPALKLADIGVAMGIAGTEVAKEASDMVLADDNFSTIVAAVGEGRSIYNNMKAFIRYMISSNIGEVASIFLTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLINLWILFRYLVIGIYVGLATVGVFIIWYTHGSFLGIDLSGDGHTLVTYSQLANWGQCSTWQNFTASPFTAGAKVISFDNDPCDYFQTGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSISFGLHFLILYVPFLAQVFGIVPLSFNEWLLVLAVAFPVILIDEILKFVGRCTSASQASSARSKQKSE* 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0142 1061 ProSitePatterns E1-E2 ATPases phosphorylation site. 383 389 IPR018303 -
Apr4g0142 1061 Gene3D - 378 776 IPR023214 -
Apr4g0142 1061 PANTHER RETICULUM [ER]-TYPE CALCIUM ATPASE, PUTATIVE-RELATED 4 1057 - -
Apr4g0142 1061 MobiDBLite consensus disorder prediction 1 20 - -
Apr4g0142 1061 SUPERFAMILY Calcium ATPase, transmembrane domain M 25 1044 IPR023298 -
Apr4g0142 1061 Pfam E1-E2 ATPase 147 361 - -
Apr4g0142 1061 SUPERFAMILY HAD-like 379 835 IPR036412 -
Apr4g0142 1061 Pfam Cation transporter/ATPase, N-terminus 27 94 IPR004014 -
Apr4g0142 1061 Pfam haloacid dehalogenase-like hydrolase 378 745 - -
Apr4g0142 1061 Gene3D - 77 1044 - -
Apr4g0142 1061 PRINTS P-type cation-transporting ATPase superfamily signature 200 214 - -
Apr4g0142 1061 PRINTS P-type cation-transporting ATPase superfamily signature 381 395 - -
Apr4g0142 1061 PRINTS P-type cation-transporting ATPase superfamily signature 625 636 - -
Apr4g0142 1061 PRINTS P-type cation-transporting ATPase superfamily signature 647 657 - -
Apr4g0142 1061 PRINTS P-type cation-transporting ATPase superfamily signature 731 750 - -
Apr4g0142 1061 PRINTS P-type cation-transporting ATPase superfamily signature 755 767 - -
Apr4g0142 1061 SUPERFAMILY Calcium ATPase, transduction domain A 150 261 IPR008250 -
Apr4g0142 1061 SFLD Haloacid Dehalogenase 362 783 - -
Apr4g0142 1061 PANTHER CALCIUM-TRANSPORTING ATPASE 4 1057 - -
Apr4g0142 1061 SFLD p-type atpase 362 783 IPR044492 -
Apr4g0142 1061 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 388 629 IPR023299 GO:0000166
Apr4g0142 1061 SMART Cation_ATPase_N_a_2 25 99 IPR004014 -
Apr4g0142 1061 Gene3D - 44 265 - -
Apr4g0142 1061 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 320 403 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr4g0142 1061 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 705 812 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr4g0142 1061 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 118 228 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr4g0142 1061 Gene3D - 391 632 IPR023299 GO:0000166
Apr4g0142 1061 Pfam Cation transporting ATPase, C-terminus 816 1042 IPR006068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0142 Apr-Chr4 1216947 1223475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0142 1 1061 Primary Pumps ATPases(2) AT1G07670 80.527 0.0 1756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0142 K01537 - gmx:100788807 1942.16