Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0130 ATGGAGACGCAGCGGATTATCGAGTTTCCGCATAGGAACATGGACAAGAGGCCAAGGAAGAAGCCTCGATTAACATGGGATATGCCCCCTCCCCCTCCTCCTCCTCCTCTTCCTCCTCCCAAGTTACAGGTTCTTCCTATAATGTATTGCGGCCAGGAGGCTGGGAATGGAGTGGTTTCAAATCATGCTTATCCATCCATGTTTTACAGGGGAATGCCTCGCAATGGATCACCCCCCTGGAGGCCTGATGATAAAGATGGTCACTACGTTTTTGCTGTTGGTGAAAATTTAACTCCTCGATACAAAATTCTCAGTAAAATGGGTGAAGGAACTTTTGGCCAAGTGTTAGAGTGTTTTGATAATGAAAAGAAAGAAGTTGTGGCAATTAAAATTGTTCGCTCCATAAACAAATATCGTGAGGCTGCAATGACTGAAATTGATGTCTTGCTGAGGCTATCCAGGCATGATGTTGATGGTGCACGTTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTGTATTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTCCGCAAAAACAGCTATCGTTCTTTTCCTATTGATCTTGTTCGGGAGTTTGGCAGACAACTTTTGGAGTCTGTAGCATTTATGCATGATTTATGCTTGATTCACACTGATCTGAAGCCAGAGAATATTCTTCTTGTCTCGTCAGAATTCATTAAAGTGCCAGACTACAAGTTTCTATCACGGACAACAAAAGATGGCTCCTATTTCAAGAATCTACCCAAGTCAAGTGCCATTAAGCTCATTGATTTTGGGAGTACAACATTTGAACATCAGGATCACAGTTATGTGGTTTCAACAAGACACTATCGTGCACCAGAAGTTATATTAGGTCTTGGGTGGAACTATCCTTGTGATCTTTGGAGTGTGGGCTGCATACTGGTTGAACTTTGCTCTGGTGAGGCACTTTTCCAAACACATGAGAACCTGGAACATCTTGCCATGATGGAGAGAGTTCTAGGGCCATTACCTCCCCATATGGTGGTCAGGGCTGACAGTCGCCGAGCTGAAAAGTATTTTAAAAGAGGTGCACGATTAAGTTGGCCTGATAGCTCAACTTCAAGAGAAAGTTTGAGAGCAGTTTGGAAACTGCCACGTTTACCGAACCTTATAATGCAGCACGTTGATCATTCTGCCGGTGATTTGATTGACCTCTTGCAAGGGCTCCTAAGGTATGACCCTGCAGAACGGCTTAAAGCAAAGGAAGCATTGAGACATCCCTTCTTCTTCACAAGAGATACAAAAAGATATGGTTACCCTTTATAA 1329 0.4304 METQRIIEFPHRNMDKRPRKKPRLTWDMPPPPPPPPLPPPKLQVLPIMYCGQEAGNGVVSNHAYPSMFYRGMPRNGSPPWRPDDKDGHYVFAVGENLTPRYKILSKMGEGTFGQVLECFDNEKKEVVAIKIVRSINKYREAAMTEIDVLLRLSRHDVDGARCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVREFGRQLLESVAFMHDLCLIHTDLKPENILLVSSEFIKVPDYKFLSRTTKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPPHMVVRADSRRAEKYFKRGARLSWPDSSTSRESLRAVWKLPRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAKEALRHPFFFTRDTKRYGYPL* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0130 442 SUPERFAMILY Protein kinase-like (PK-like) 88 433 IPR011009 -
Apr4g0130 442 MobiDBLite consensus disorder prediction 1 37 - -
Apr4g0130 442 CDD PKc_CLK 88 430 - -
Apr4g0130 442 Gene3D Transferase(Phosphotransferase) domain 1 155 430 - -
Apr4g0130 442 Gene3D Phosphorylase Kinase; domain 1 88 181 - -
Apr4g0130 442 Pfam Protein kinase domain 101 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g0130 442 PANTHER BNAA07G37640D PROTEIN 1 434 - -
Apr4g0130 442 ProSiteProfiles Protein kinase domain profile. 101 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g0130 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Apr4g0130 442 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 434 - -
Apr4g0130 442 MobiDBLite consensus disorder prediction 1 24 - -
Apr4g0130 442 SMART serkin_6 101 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0130 Apr-Chr4 1117601 1122837 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0130 101 430 Core Cell Cycle Gene Families AT1G76540 26.531 9.05e-30 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Apr4g0130 Pkinase 2.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0130 K08287 - gmx:100808061 853.203