Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0127 ATGAAGAGACAGAGAGATAATTGTCTGATGCTACTTTGTTCTCCACAAGAAAGCAACAAAGCACAAGAGAAAAGTTTTGGGTCGGTGGAATTTGAATGCAAGACCTGCAACCGCAAGTTCTCGTCTTTTCAAGCACTGGGTGGCCACAGGGCTAGCCACAAGAGGCCGAAACTAGAGGGTGGTGAAGAACTCAAAGAAGAGGCAAAATCTCTGAGCTTGTGGAACAAACCCAAAATGCACGAGTGCTCTATTTGTGGCCTCGGATTCTCTCTGGGTCAGGCATTGGGTGGCCACATGAGAAAACACAGAGGTGCCATCAATGAAGGGTTTTCTTCTATCAACCAAGTTATTGCAAAAATCCCAGTTTTGAAAAGATCGAATAGCACCAGGGTTATGTGCTTGGACTTGAACTTGACACCTCTTGAGAATGACTTGATGTTTGGGATGAAGTCACCCCCGGTTCCTCTTTCTTTGTTCTGA 480 0.4542 MKRQRDNCLMLLCSPQESNKAQEKSFGSVEFECKTCNRKFSSFQALGGHRASHKRPKLEGGEELKEEAKSLSLWNKPKMHECSICGLGFSLGQALGGHMRKHRGAINEGFSSINQVIAKIPVLKRSNSTRVMCLDLNLTPLENDLMFGMKSPPVPLSLF* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0127 159 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 107 IPR013087 -
Apr4g0127 159 Pfam C2H2-type zinc finger 80 104 - -
Apr4g0127 159 Pfam C2H2-type zinc finger 31 56 - -
Apr4g0127 159 Gene3D Classic Zinc Finger 28 102 - -
Apr4g0127 159 SUPERFAMILY beta-beta-alpha zinc fingers 31 102 IPR036236 -
Apr4g0127 159 ProSitePatterns Zinc finger C2H2 type domain signature. 33 53 IPR013087 -
Apr4g0127 159 ProSiteProfiles Zinc finger C2H2 type domain profile. 31 58 IPR013087 -
Apr4g0127 159 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Apr4g0127 159 PANTHER ZINC FINGER PROTEIN ZAT5 7 152 - -
Apr4g0127 159 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 7 152 - -
Apr4g0127 159 SMART c2h2final6 31 53 IPR013087 -
Apr4g0127 159 SMART c2h2final6 80 102 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0127 Apr-Chr4 1106070 1106739 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0127 1 155 C2H2 Transcription Factor Family AT2G37430 46.243 2.55e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr4g0127 zf-C2H2_6 6.3e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0127 - - aprc:113870747 223.016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0127 4 1106070 1106739 Apr8g0416 8 3542186 3547761 PCT