Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0126 ATGAAGAGACAAAGAGATATGGAAGGGTTAGAGAACATAGATTTGGCAAATTGTCTAATGCTTCTCTCTCGACCCCAAGAAGGCAAAAAGCTACAGCAGAGAAGTTTTGAGGCAGTGGAATTTGAGTGCAAAACTTGCAACCGCAAGTTCTCGTCCTTTCAAGCATTGGGTGGCCACAGAGCTAGCCACAAGAGGTTGAAACTTGAAGGGGACGAAATCAAAGCACATGCCACATCTCTTAGTTTGGGAATTAATAAACCCAAAATGCATGAATGTTCCATTTGTGGACAAGAATTCTCATTGGGACAAGCACTTGGAGGCCACATGAGAAGGCACAGAACTGTTATCAACGAGGAGTTTTCTTCAATAAAACATGTTGTTGCACAAGTACCGGTTTTGAAAAGATCGAATAGCACGAGAGCAGTTACGTGTTTGGATTTGAACTTAACACCGCTGGAGAATGACTTAAAGGTTTTGTTTGGAAAGATGGCACCCAATTTTGCTGGTGCCTTTGTCTGA 519 0.4239 MKRQRDMEGLENIDLANCLMLLSRPQEGKKLQQRSFEAVEFECKTCNRKFSSFQALGGHRASHKRLKLEGDEIKAHATSLSLGINKPKMHECSICGQEFSLGQALGGHMRRHRTVINEEFSSIKHVVAQVPVLKRSNSTRAVTCLDLNLTPLENDLKVLFGKMAPNFAGAFV* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0126 172 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Apr4g0126 172 Gene3D Classic Zinc Finger 38 112 - -
Apr4g0126 172 SMART c2h2final6 90 112 IPR013087 -
Apr4g0126 172 SMART c2h2final6 41 63 IPR013087 -
Apr4g0126 172 SUPERFAMILY beta-beta-alpha zinc fingers 41 112 IPR036236 -
Apr4g0126 172 PANTHER ZINC FINGER PROTEIN ZAT5 12 166 - -
Apr4g0126 172 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Apr4g0126 172 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 12 166 - -
Apr4g0126 172 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Apr4g0126 172 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Apr4g0126 172 Pfam C2H2-type zinc finger 41 65 - -
Apr4g0126 172 Pfam C2H2-type zinc finger 90 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0126 Apr-Chr4 1100958 1101476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0126 1 172 C2H2 Transcription Factor Family AT2G37430 49.721 5.39e-51 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr4g0126 zf-C2H2_6 1.2e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0126 - - gmx:100806997 286.189