Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0119 ATGGCTTTTGTTCAGCGCATGCTTCGCCACACCCCACTTCTTCGCTCTCACTTTGCTTCCATTCGTCTCAGTTCAACTCTCACTTCCCCCAAACTTTTCGTCAGCGGTCTGTCAAGACTGACAACAGATGAAAAACTTAAGGAAGCATTTTCTTCTTATGGGCAGCTGATTGATGGTAATAATGGGCATTTTCCCCCTAATGTACTTGAGTATAATATCCTGATTTTAGTTCAATTTATGTTGTGCTTGACCTTTGGTCATTTTGACTATACAGCTAAGGTGATTACTGATAGAGCCTCTGGAAGATCGAAGGGATTTGGTTTTGTTACTTACACAACCATTGAAGAAGCTGAAAAGGCAAGAGAAGGAATGAATGCTAAGTTTTTGGATGGTTGGGTTATATTTGTCGATCCTGCTAAACCAAGAGAGCCCAGACCTCCTCAGCAATCACAGTCTCAGCCCTCTGAAACAGGTTTTACAGTTAACAAAACAGTCGGGTGGTGTGGTTGA 510 0.4235 MAFVQRMLRHTPLLRSHFASIRLSSTLTSPKLFVSGLSRLTTDEKLKEAFSSYGQLIDGNNGHFPPNVLEYNILILVQFMLCLTFGHFDYTAKVITDRASGRSKGFGFVTYTTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPQQSQSQPSETGFTVNKTVGWCG* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0119 169 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 131 IPR000504 GO:0003723
Apr4g0119 169 SMART rrm1_1 31 137 IPR000504 GO:0003723
Apr4g0119 169 PANTHER NUCLEOLAR PROTEIN 8 4 169 - -
Apr4g0119 169 SUPERFAMILY RNA-binding domain, RBD 24 152 IPR035979 GO:0003676
Apr4g0119 169 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 141 IPR000504 GO:0003723
Apr4g0119 169 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 4 169 - -
Apr4g0119 169 MobiDBLite consensus disorder prediction 140 169 - -
Apr4g0119 169 Gene3D - 20 153 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0119 Apr-Chr4 1040845 1042622 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0119 32 156 Eukaryotic Initiation Factors Gene Family AT3G16380 28.906 7.06e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0119 - - aprc:113863314 325.479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0119 4 1040845 1042622 Apr4g0119 4 1040845 1042622 ECH