Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr4g0117 | ATGACTTCATTCTTGAAGCCTGAGAATGCCCTCAAAAGGGCGGAAGAATTAATCAATGTCGGGCAGAAGCAGGACGCTTTGCAGACACTTCATGACCTTATTACTTCTAAGAGATACAGAGCATGGCAGAAGACACTTGAAAGGATTATGTTCAAGTATGTAGAGCTGTGCGTAGACATGCGCAAGGGACGATTTGCAAAAGATGGGCTTATTCAGTATAGAATCATATGTCAGCAAGTGAATGTTAGTTCGCTGGAGGAGGTGATCAAGCATTTTATGCACCTGTCAACTGAGAAAGCTGAACAAGCCCGTAGCCAGGCACAGGCATTAGAAGAAGCCCTTGATGTTGATGATTTAGAGGCAGACAAAAGGCCCGAGGACTTGATGTTAAGCTATGTCAGTGGTGAGAAAGGAAAGGACAGATCTGATCGAGAGCTCGTTACCCCATGGTTTAAATTTCTTTGGGAAACATACAGGACAGTGCTTGAAATATTACGGAACAACTCTAAACTGGAAGCCTTATATGCTATGACAGCTCATCGAGCTTTCCAGTTTTGTAAGCAGTATAAAAGAACAACAGAGTTCCGCAGACTCTGTGAAATCATAAGAAACCATTTGGCCAACCTTAATAAATATCGGGACCAACGAGATCGACCTGATCTTTCAGCTCCTGAGAGCTTGCAACTGTATCTTGATACTAGATTTGAGCAGCTGAAAATTGCCACTGAACTTGAGCTCTGGCAGGAAGCCTTCCGATCTGTGGAAGATATACATGGACTGATGTGCATGGTCAAAAAAGTGCCCAAGGCATCCTTGATGGTAGTTTACTATGTCAAGCTGACAGAAATATTTTGGATATCATCAAGTCATCTATATCATGCATATGCGTGGTTCAGGCTCTTCTTGTTACAAAAAAGCTTCAATAAGAATCTGAATCAGAAGGATTTGCAATTAATTGCTTCATCTGTTGTTCTGGCTGCACTTTCAGTGCCTCCTCATGATCGCACTCATGGTGCATCACATTTGGAGCTTGAGCATGAAAAAGAGAGAAATTTGAGAATGGCTAATCTCATTGGTTTTAATCTTGAAACTAAACCCGAAAGCAGAGAAGTGCTCTCAAGGTCATCACTTCTTGCAGAACTGGCATCGAAGGGGGTGATGTCTTGTGTAACTCAGGAAGTGAAAGACATCTACAATCTTCTGGAGCATGAATTTCTTCCCTCAGATCTTGCATTAAAAGTGCTCCCCTTGTTAACTAAGATCTCAAGCCTAGGTGGTAAGATTTCCAGTGCTCCAATTATTCCAGATGTGCAATTGTCTCAGTATGTCCCGGCACTGGAAAAACTAGCAACCTTGAGGTTGCTACAGCAGGTGTCTAATGTGTACCAGACAATGAAGATTGAGACCTTATCTGGAATGATTCCCTTCTTTGAATTTTCTGTGGTGGAAAAGATTTCTGTAGATGCTGTTAAGCAGAAGTTTGTATCAATGAAAGTTGACCACATGAAAAATGTTGTAATTTTTTGCAAATCGACTCTTGAGTCTGATGGCTTAAAGGATCACTTGGCCAATTTTGCTGAACAATTGAATAAGGCAAGACAAATGATTCATCCTCCTGAAAGGAAACCATCAAAACTTGGAGCTTTACTTCCGACTCTGACGGAGGTTGTGGCCAAAGAACACAAGAGACTTCTTGCTCGAAAATCGATTATCGAGAAGAGGAAAGAAGAACAAGAGCGACAGCTGCTTGAAATGGAACGGGAAGAGGAGTCAAAGAGGTTGAGACTGCAGAAAATAACCGAAGAAGCAGAACAGAGACGTCTTGCCACCGAGTATGAACAGAGGAAGAATCAAAGGATCCTTAGGGAAATAGAGGAAAGAGAAATTGAAGAAGCTCAAGCTTTACTCCAGGAAGCTGAAAAGCGTATTAAAAAGAAGGGGAAAAAGCCAATCATTGAGGGGGACAAAATTACCAAGCAGACCTTGATGGAACTGACATTGACTGAACAACTTCGGGAAAGACAGGAAATGGAAAAGAAACTGCAAAAATTAGCTAAAACCATGGATTATTTGGAAAGGGCGAAAAGAGAAGAGGCTGCTCCCCTGATTGAAGCTGCATATCAACAGCGCCTAGTGGAAGAGAGGATTCTTCATGAACGCGAGCAACAACAAGAGGTTGAAGTAAGCAAGCAGCGGCATGAGGGAGATCTTAAGGAAAAAGAGAGGCTTGCTCGAATGATTGGCAACAAAGAGATATATCAAGAGAGGGTTGTCAGTCATCGCCAAGCAGAGTTTAACAGATTGAGGAGGGAAAGGGAAGAGCGGATCTCTAGGATTTTACAGGCCAGGAGACAGGAGAGGGAAAAAATGAGGAAGTTGAAGTTTTATCTCAAGTTAGAAGAAGAGAGACAACAAAAATTGCGCGAGGAGGAGGAGGCTCGGAAGCGTGAAGAGGCTGAAAGACGAAAGAAGGAGGAGGCTGAACGCATTGCAAAATTGAATGAGATAGCTGAAAAGCAGAGGCAAAGAGAGAGGGAACTAGAGGAAAAGGAGAGACAGAGGAGAGAATCATTGTTGGGCAAATCCGCTGAACCAGCTCCGAGGCCTTCTGAGCCCCCTGCACGTCCATTGGAGTCTGGATCTAATGCTCCTGCTGCTGCCGCAGCTTCTGCAGCCCCAGCAGCAGGCAAATACGTTCCTAAGTTCAGGCGAGATAGAAGTGAAAGCACAGCAGCTGCTCCTCCTCCAGAAACTGATCGCTGGAATAGCAGCAGGCAAGACGGTGACAGGTGGCGTAGTGATGATCGCAGAGCTGCGTTTGGTTCTGGTGCGGGTTCAAGATCATCTTCTGCGTGGTCATCTTCCAGGAATCGTTGA | 2877 | 0.4397 | MTSFLKPENALKRAEELINVGQKQDALQTLHDLITSKRYRAWQKTLERIMFKYVELCVDMRKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKIATELELWQEAFRSVEDIHGLMCMVKKVPKASLMVVYYVKLTEIFWISSSHLYHAYAWFRLFLLQKSFNKNLNQKDLQLIASSVVLAALSVPPHDRTHGASHLELEHEKERNLRMANLIGFNLETKPESREVLSRSSLLAELASKGVMSCVTQEVKDIYNLLEHEFLPSDLALKVLPLLTKISSLGGKISSAPIIPDVQLSQYVPALEKLATLRLLQQVSNVYQTMKIETLSGMIPFFEFSVVEKISVDAVKQKFVSMKVDHMKNVVIFCKSTLESDGLKDHLANFAEQLNKARQMIHPPERKPSKLGALLPTLTEVVAKEHKRLLARKSIIEKRKEEQERQLLEMEREEESKRLRLQKITEEAEQRRLATEYEQRKNQRILREIEEREIEEAQALLQEAEKRIKKKGKKPIIEGDKITKQTLMELTLTEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQQRLVEERILHEREQQQEVEVSKQRHEGDLKEKERLARMIGNKEIYQERVVSHRQAEFNRLRREREERISRILQARRQEREKMRKLKFYLKLEEERQQKLREEEEARKREEAERRKKEEAERIAKLNEIAEKQRQRERELEEKERQRRESLLGKSAEPAPRPSEPPARPLESGSNAPAAAAASAAPAAGKYVPKFRRDRSESTAAAPPPETDRWNSSRQDGDRWRSDDRRAAFGSGAGSRSSSAWSSSRNR* | 959 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr4g0117 | 958 | MobiDBLite | consensus disorder prediction | 943 | 958 | - | - | |
| Apr4g0117 | 958 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT | 1 | 908 | IPR027512 | GO:0005852 | |
| Apr4g0117 | 958 | Pfam | PCI domain | 373 | 508 | IPR000717 | - | |
| Apr4g0117 | 958 | ProSiteProfiles | PCI domain profile. | 316 | 513 | IPR000717 | - | |
| Apr4g0117 | 958 | Gene3D | - | 268 | 342 | - | - | |
| Apr4g0117 | 958 | Gene3D | - | 352 | 511 | - | - | |
| Apr4g0117 | 958 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A | 1 | 908 | - | - | |
| Apr4g0117 | 958 | SMART | PINT_4 | 441 | 532 | IPR000717 | - | |
| Apr4g0117 | 958 | MobiDBLite | consensus disorder prediction | 803 | 861 | - | - | |
| Apr4g0117 | 958 | Hamap | Eukaryotic translation initiation factor 3 subunit A [EIF3A]. | 1 | 939 | IPR027512 | GO:0005852 | |
| Apr4g0117 | 958 | Gene3D | UVR domain | 217 | 267 | - | - | |
| Apr4g0117 | 958 | Coils | Coil | 615 | 649 | - | - | |
| Apr4g0117 | 958 | Coils | Coil | 796 | 856 | - | - | |
| Apr4g0117 | 958 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 441 | 532 | - | - | |
| Apr4g0117 | 958 | Coils | Coil | 667 | 697 | - | - | |
| Apr4g0117 | 958 | MobiDBLite | consensus disorder prediction | 922 | 937 | - | - | |
| Apr4g0117 | 958 | Coils | Coil | 561 | 602 | - | - | |
| Apr4g0117 | 958 | Coils | Coil | 93 | 120 | - | - | |
| Apr4g0117 | 958 | MobiDBLite | consensus disorder prediction | 803 | 958 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Apr4g0117 | 1 | 958 | Eukaryotic Initiation Factors Gene Family | AT4G11420 | 72.513 | 0.0 | 1330 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr4g0117 | K03254 | - | gmx:100782598 | 1478 |