Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0113 ATGGCGGCGTCGCGGCGGCTCCGGGACCTCCAATCGCAACCGGCGAACAAGATCTGCGTCGATTGTTCCCAGAAGAACCCTCAATGGGCCTCAGTATCATACGGAGTCTTCATGTGCTTAGAGTGCTCCGGCAAACACCGTGGCCTCGGCGTTCACATCTCGTTCGTGCGATCCGTTACGATGGATTCATGGTCTGAGATCCAGATCAAGAAGATGGAAGCAGGAGGAAACGATAAACTCAACGCGTTCCTCGCTCAATACGGTATCGCTAAGGAAACCGATATCGTTTCAAAGTACAACTCTAACGCCGCTTCGGTGTACCGTGATCGCATTCAGGCCATCGCCGATGGCCGTCCCTGGCGGGATCCACCCGTCGTTAAGGAGAATGTACGCTCCGCTGCCTCCAAGGGGAAGCCGCCGTTGGCTTCCAACGGCAACAACGGAGGCTGGGATAGTTGGGACAACGACGCGGTTTTCGGATCTCGCGGCGATATCCGCCGTAACCAGTCGACCGGCGATGTTAGGGGGTTTGGCGGAGCCGGAGGCGCGCCGGCGAGGTCGAAATCGACGGAGGATATCTACACGCGCACGCAATTGGAAGCTTCTGCGGCTAATAAGGAGAGTTTCTTCGCGAAGAAGATGGCGGAGAACGAATCGCGACCGGAGGGGCTTCCGCCGTCGCAGGGTGGGAAGTACGTCGGGTTCGGATCTAGCCCCGCCCCTATGCAGAGGAGTAATCAGCAAAACGATTATTTGTCTGTCGTTTCTCAGGGAATTGGTAAATTATCGTTGGTTGCTGCTTCTGCGGCTCAGTCTGCTGCTAATGTTGTTCAGGCGGGGACAAAAGAAATCAGTGCTAAGGTAAAAGAGGGTGGTTATGATCACAAGGTCAATGAGACTGTCAATGTTGTCACTCAGAAGACATCAGAGATTGGACATAGGACATGGGGTATAATGAAAGGGGTCATGGCATTGGCTTCACAGAAGGTTGAGGAATACACTAGGGATAACCCAAATTGGAGGCCTGATAACTGGCAACAAAATGAAAATGATAGAAATGGGTTCTATCAGGAATTTCATCAAGAGAATAAAGGCTGGAATTCTTATGCCAGAGAAGGACAACCTTCTTCAGGTGGACAAACTAATACCTACAACTCGAGCTCTTGGGATGATTGGGACCACAAAGATTCTAGGAAGGAAGAGCCAGCTAAAGGATCAGCTCATCAATCATCAGGTGGGCAGTCTGGTACTTATAATTCAAGCTCTTGGGATGATTGGGACAATGAAGATACAGGGAAGAAAGAACCAGCTAAAGGGTCAGCTGCCCACAGCAGTGATGGTTGGGCTGGTTGGGATAATGCCAGAGATGATGGATTTGATAATATATATGGAAATGCATCTAATAATAAAGCTGTTGGTCATAATGAGAAGTCGGGTGTTGCATGGACAGAAGGAGGCTTTCTCTAA 1467 0.5058 MAASRRLRDLQSQPANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNDKLNAFLAQYGIAKETDIVSKYNSNAASVYRDRIQAIADGRPWRDPPVVKENVRSAASKGKPPLASNGNNGGWDSWDNDAVFGSRGDIRRNQSTGDVRGFGGAGGAPARSKSTEDIYTRTQLEASAANKESFFAKKMAENESRPEGLPPSQGGKYVGFGSSPAPMQRSNQQNDYLSVVSQGIGKLSLVAASAAQSAANVVQAGTKEISAKVKEGGYDHKVNETVNVVTQKTSEIGHRTWGIMKGVMALASQKVEEYTRDNPNWRPDNWQQNENDRNGFYQEFHQENKGWNSYAREGQPSSGGQTNTYNSSSWDDWDHKDSRKEEPAKGSAHQSSGGQSGTYNSSSWDDWDNEDTGKKEPAKGSAAHSSDGWAGWDNARDDGFDNIYGNASNNKAVGHNEKSGVAWTEGGFL* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0113 488 CDD ArfGap_ArfGap1 3 117 - -
Apr4g0113 488 SMART arf_gap_3 1 120 IPR001164 GO:0005096
Apr4g0113 488 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 414 IPR044519 GO:0005096|GO:0016192
Apr4g0113 488 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 407 488 IPR044519 GO:0005096|GO:0016192
Apr4g0113 488 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 407 488 - -
Apr4g0113 488 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 414 - -
Apr4g0113 488 MobiDBLite consensus disorder prediction 367 473 - -
Apr4g0113 488 SUPERFAMILY ArfGap/RecO-like zinc finger 5 109 IPR037278 -
Apr4g0113 488 MobiDBLite consensus disorder prediction 389 405 - -
Apr4g0113 488 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Apr4g0113 488 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Apr4g0113 488 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Apr4g0113 488 MobiDBLite consensus disorder prediction 426 440 - -
Apr4g0113 488 MobiDBLite consensus disorder prediction 407 425 - -
Apr4g0113 488 Gene3D Arf GTPase activating protein 1 129 IPR038508 -
Apr4g0113 488 Pfam Putative GTPase activating protein for Arf 5 107 IPR001164 GO:0005096
Apr4g0113 488 MobiDBLite consensus disorder prediction 367 388 - -
Apr4g0113 488 MobiDBLite consensus disorder prediction 165 191 - -
Apr4g0113 488 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 110 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0113 Apr-Chr4 1002356 1006726 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0113 5 87 C2H2 Transcription Factor Family AT4G05330 50.000 9.95e-23 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0113 K12492 - gmx:100778302 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0113 4 1002356 1006726 Apr4g0113 4 1002356 1006726 ECH