Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0107 ATGGCTGGAAAAGGAGAGGGTCCTGCAATCGGAATCGATCTCGGAACCACTTACTCTTGCGTCGGTGTCTGGCAACATGACCGCGTCGAAATTATCGCCAACGATCAAGGTAACAGAACGACGCCGTCTTACGTCGGTTTCACTGACACCGAACGTCTCATCGGTGACGCCGCTAAGAACCAAGTCGCTATGAACCCTATCAACACCGTCTTCGATGCTAAGAGGTTGATTGGTCGTAGATTCAATGATGCCTCTGTCCAGAGTGATATTAAGTTGTGGCCATTTAAGGTCATTGCTGGTGCTGCTGATAAGCCAATGATTGTGGTTAACTACAAGGGTGAAGAGAAGCAATTTGCAGCAGAAGAAATTTCTTCTATGGTACTCATGAAGATGCGTGAGATTGCTGAGGCTTATCTTGGTTCTACGATTAAGAATGCTGTTGTTACAGTACCTGCTTACTTTAATGATTCTCAGCGTCAAGCTACCAAGGATGCCGGTGTCATTGCGGGTCTTAATGTTATGCGAATTATCAACGAGCCTACTGCAGCTGCCATTGCTTATGGTCTTGACAAGAAGGCTACAAGCGTTGGTGAGAAGAATGTCTTGATTTTTGATCTTGGTGGTGGAACATTTGATGTTTCTTTGCTTACTATTGAGGAGGGTATCTTTGAGGTGAAAGCAACAGCCGGAGACACTCATCTTGGAGGTGAGGATTTTGATAACAGGATGGTGAACCACTTTGTTCAAGAGTTTAAGAGAAAGAACAAGAAGGACATAAGTGGCAACCCCAGAGCTCTTAGAAGGTTGAGAACTTCTTGTGAGAGGGCAAAGAGAACGCTATCATCTACTGCTCAGACTACCATTGAAATTGATTCTCTGTATGAGGGAATTGATTTCTACTCTACCATTACTCGTGCCAGATTTGAGGAGCTCAACATGGATCTCTTTAGGAAATGTATGGAACCGGTTGAGAAATGTTTAAGAGATGCTAAGATGGACAAAAGGAGTGTCCATGATGTTGTCCTTGTTGGTGGTTCTACCAGAATTCCCAAGGTTCAACAACTTTTGCAGGACTTCTTTAATGGAAAGGAGTTATGCAAGAGCATAAATCCTGATGAGGCTGTTGCATATGGTGCTGCTGTTCAGGCTGCAATTTTGAGTGGTGAGGGCAATGAGAAGATGGTTCAAGAGGCTGAGAAGTACAAATCAGAGGATGAAGAGCATAAGAAGAAGGTTGAGGCCAAGAATGCTTTGGAAAACTATGCATATAATATGAGGAATACTGTGAAGGATGATAAGATTGGCGGAAAACTTGCTCCAGCTGATAAGAAGAAGATTGAGGACGCTATTGAGCAGGCTATCCAGTGGCTAGACAACAACCAGCTTGCAGAGGCAGACGAGTTTGAGGACAAAATGAAGGAATTGGAAAGCATCTGCAATCCTATCATTGCCAAGATGTATCAGGGTGGTGCTGGTCCAGATGTGGGTGGTGGAGCCGATGATGATTATGCTCCTCCTTCTGGTGGCAGTGGTGCTGGCCCCAAGATTGAGGAAGTCGACTAA 1563 0.4472 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRRFNDASVQSDIKLWPFKVIAGAADKPMIVVNYKGEEKQFAAEEISSMVLMKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKRSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVKDDKIGGKLAPADKKKIEDAIEQAIQWLDNNQLAEADEFEDKMKELESICNPIIAKMYQGGAGPDVGGGADDDYAPPSGGSGAGPKIEEVD* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0107 520 Coils Coil 391 411 - -
Apr4g0107 520 Gene3D - 71 126 - -
Apr4g0107 520 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 413 494 IPR029048 -
Apr4g0107 520 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 1 394 - -
Apr4g0107 520 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 392 498 - -
Apr4g0107 520 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Apr4g0107 520 Gene3D - 409 520 IPR029048 -
Apr4g0107 520 Gene3D Actin; Chain A, domain 4 235 318 - -
Apr4g0107 520 SUPERFAMILY Actin-like ATPase domain 198 388 IPR043129 -
Apr4g0107 520 Gene3D - 192 366 - -
Apr4g0107 520 MobiDBLite consensus disorder prediction 489 520 - -
Apr4g0107 520 PANTHER HEAT SHOCK PROTEIN 70KDA 392 498 IPR013126 GO:0005524|GO:0140662
Apr4g0107 520 PANTHER HEAT SHOCK PROTEIN 70KDA 1 394 IPR013126 GO:0005524|GO:0140662
Apr4g0107 520 Gene3D - 10 384 - -
Apr4g0107 520 Pfam Hsp70 protein 392 488 IPR013126 GO:0005524|GO:0140662
Apr4g0107 520 Pfam Hsp70 protein 9 389 IPR013126 GO:0005524|GO:0140662
Apr4g0107 520 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Apr4g0107 520 PRINTS 70kDa heat shock protein signature 8 21 - -
Apr4g0107 520 PRINTS 70kDa heat shock protein signature 36 48 - -
Apr4g0107 520 PRINTS 70kDa heat shock protein signature 58 66 - -
Apr4g0107 520 PRINTS 70kDa heat shock protein signature 146 166 - -
Apr4g0107 520 PRINTS 70kDa heat shock protein signature 209 219 - -
Apr4g0107 520 PRINTS 70kDa heat shock protein signature 337 353 - -
Apr4g0107 520 PRINTS 70kDa heat shock protein signature 369 389 - -
Apr4g0107 520 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Apr4g0107 520 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Apr4g0107 520 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0107 Apr-Chr4 960574 963521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0107 1 520 Calmodulin-binding Proteins AT5G02500 91.954 0.0 972
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0107 K03283 - csin:114277576 860.907