Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0101 ATGAATCAAAATCACTGTGTTCCAGATTTCCAAACTCAAATGGACGAAGAACAGGATCAGTTCCCGATTCTCATGCCTTCAGGGTTACCTCACCAAAACAAACCCTCCATTGCAGAAGAAGACATCATCGAGCTGCTATGGCAAAACGGTCAGGTTGTCATGCAGAGCCAGAACCACCGTCCTCTCAGAAAAACGCCGACGCAGAGAAATTCCAACCACGCCACTCTCGCCGGTCCATCCACGCCGAGGGAGGTTCCACCGCTGGTCCACAACTACAATCAACATCTCTTCATGCAAGAAGGAGAAATGGCTTCCTGGCTTCACTATCCAATCGACGATCATGATTCTCCCTTGGATCAAAGCTTCTGCGCCGATTTCCTCTGCCCGCCGCCCACCGTTAATCACAACAGTGTCATGCAAAATCTTGCCCGTACATCTCAGCCGACGGAGCTCCGGAAGACGCCGGCGTCGATGGCTTCTCGACCTCCGATTCCGCCGCCTAGGAGGACGGAAGAGGCGCCGCCCAAGACGCCGAACTTCGCGTACTTCTCGAGGCACAATGCTAGAGCCGAGCCGGGGCCGTCGTCGACTTCGAAGACCGCCGCGAGGGAGTCCACGGTGGTGGATTCGTGCGACACGCCTGCCGCCACGGCGGAAGTGGCGGCGGCTTCGAGAGTTTCGGAGACTGTGAGAAGCTCGGCAGAGCCGACGGAAGAACCCAGCGGTGCAGCGGCGCCTTCGACGACGAGTGCCGGCGGAGCAAGGAGCACGATGATGTGCGATTTGACGATGACGTCATCGCTGGGCGGCTCGAGTAGCAGCGGCGAACCGGTTCAGATGGCGGCGGCGCAGGAGCGGAAGCGGAAGCGGAAGGGTCGGGAGACAGAGGAATGGGAGTGTCAGAGCGAGGATGTTGATTTTGAATCAGAAGCAAAGAAACAAACTCGTGGATCAACATTTGCAAAGAGATCACGTGCTGCCGAGGTCCATAATCTCTCAGAGAGGAGGCGTCGTGATCGGATTAATGAAAAGATGAGAGCTCTGCAAGAACTTATACCTCGTTGTAATAAGTCTGACAAAGCTTCAATGCTGGATGAAGCTATTGAATACTTGAAGTCATTGCAGTTACAAGTGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATCCAGCAGTATATGCCAGCAATTGGAATGGGTATTGGCATGGAAATGGGAATGAACAGACCAGTAATGCCATTTCCCAATATGTTACCTGGTTCGGCTTTGTCAGCAGCAACTGCAGCTGCTCATTTGGGACCAAGGTTTGCTATGCCTCCTTTCCACATGCCACATGTTCCTGCACCTGATTCATCTAGAATGCAAGCAGCAAATCACTCAGCTGATATCAATATGGCCACCTCTGCGGGTCCACCTGAACCAAATCAGTCACGTATCCCGAACTTCACTGATCCTTATCAATACCTTGGTCCCCAACAGACGCAGTTTCAATTAATTCAGAATCAAGCAGTGAATCAACCAAATGTTAGCAGGCCAAGCGCCAGTAGGGGCCCTGAGAATCCAGAAAACCATTAG 1590 0.527 MNQNHCVPDFQTQMDEEQDQFPILMPSGLPHQNKPSIAEEDIIELLWQNGQVVMQSQNHRPLRKTPTQRNSNHATLAGPSTPREVPPLVHNYNQHLFMQEGEMASWLHYPIDDHDSPLDQSFCADFLCPPPTVNHNSVMQNLARTSQPTELRKTPASMASRPPIPPPRRTEEAPPKTPNFAYFSRHNARAEPGPSSTSKTAARESTVVDSCDTPAATAEVAAASRVSETVRSSAEPTEEPSGAAAPSTTSAGGARSTMMCDLTMTSSLGGSSSSGEPVQMAAAQERKRKRKGRETEEWECQSEDVDFESEAKKQTRGSTFAKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPAIGMGIGMEMGMNRPVMPFPNMLPGSALSAATAAAHLGPRFAMPPFHMPHVPAPDSSRMQAANHSADINMATSAGPPEPNQSRIPNFTDPYQYLGPQQTQFQLIQNQAVNQPNVSRPSASRGPENPENH* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0101 529 MobiDBLite consensus disorder prediction 146 328 - -
Apr4g0101 529 MobiDBLite consensus disorder prediction 56 85 - -
Apr4g0101 529 MobiDBLite consensus disorder prediction 226 279 - -
Apr4g0101 529 MobiDBLite consensus disorder prediction 469 529 - -
Apr4g0101 529 CDD bHLH_AtPIF_like 325 388 - -
Apr4g0101 529 MobiDBLite consensus disorder prediction 282 298 - -
Apr4g0101 529 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 4 529 - -
Apr4g0101 529 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 323 391 IPR036638 GO:0046983
Apr4g0101 529 MobiDBLite consensus disorder prediction 159 173 - -
Apr4g0101 529 Gene3D - 321 383 IPR036638 GO:0046983
Apr4g0101 529 MobiDBLite consensus disorder prediction 56 78 - -
Apr4g0101 529 Pfam Helix-loop-helix DNA-binding domain 329 375 IPR011598 GO:0046983
Apr4g0101 529 SMART finulus 331 380 IPR011598 GO:0046983
Apr4g0101 529 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 325 374 IPR011598 GO:0046983
Apr4g0101 529 MobiDBLite consensus disorder prediction 190 212 - -
Apr4g0101 529 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 4 529 IPR031066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0101 Apr-Chr4 921907 927935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0101 5 380 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 41.927 4.20e-66 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr4g0101 HLH 1.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0101 - - gmx:100797225 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0101 4 921907 927935 Apr4g0101 4 921907 927935 ECH
Apr4g0101 4 921907 927935 Apr8g0019 8 208096 210059 PCT