Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0089 ATGCCGGTGTCGGTTGTCTTCCTCGTTGCTCTTCTCAACTTCCTTTTCTCTTCCCAAGTGAAGTCAATTTCTCTGAGTGTGTCGTTTACATCATCAGAACAAGCTAAAATGTGGTTAGTTAAACCTTCTTCTGGACCATCTTCTGCTCCTGTGCCATCTCCATCTTATCAAGGTCCTAGTGCGACTCCAAGACTAAAACATCATCATCACCATCGTCACCATCGTAGCATTAGACCTTATGTGGTGGCTCCACCCCCTTCAAAGGACCAAGCTTGTGACCAAATCTGTTCTGATCCACTCACATCAACTCCCTTTGGTTCACCTTGTGGTTGTGTGTTTCCCATGAAAGTCAGACTTACGCTGTATGTAGCTCCTTATGCTGTGTTTCCAGTAATGACTGAGTTGGAGAATGAAATTGCATTAGGCACTTATTTAGAGCAGAGTCAGGTGAAGATAATGGGTGCCAGTGCTGACAGTCAAAATCAGGGAAGAACCATTGTTGATATTAACTTGGTTCCACTGGGAGAAAAATTTGATAATACAACTGCAGCTCTGACATACGAGAGGTTTTGGCACAAGAAAGTTCCTCTAAATAGGAGCCTTTTTGGTGATTATGCTGTTGTGTACATAACTTATCCAGGAATGCCATCTTCGCCACCATATGGAACTTTAGTTGGGAGCGGTCCCAGTCAAAGTGTTGATGGTATTCTGCCAGTCAGTGCCAACTTTGTCAGCAAGAACCAGAAAATGAATCTTAGGACCATAATTATCATTGCTTTATCTTCCTTTGTACTCTTGCTGGTTTTGGTGGGAGCATTTTCCATCACTTTGAAATGGAGGAGGGCTAAGGGACCATTAAGTGCTGTTGGCCCTGCTTTCACATCATCTCTAAACAAGAGATCTGGCTTGGGATCCATGTTGTCAAGCAGTATTATGAGCTCGACATCAGTGTCACTTATGTCCACAATGGCTACTTCCATTCTCTCTGTTAAAACATTTTCACTTTCTGACCTTGAGAAAGCAACAGATAAGTTTAATTCAAAAAGAGTATTAGGAGAAGGAGGATTTGGACGTGTTTACAGGGGTACATTGGATGATGGGGCTGAAGTTGCAGTTAAGCTGCTAACAAGGGATAATCAAAATGGAGACCGTGAATTTATTGCGGAGGTTGAGATGCTAAGCCGTTTGCATCACCGTAATCTAGTGAAACTGATTGGTATATGCATTGAAGGGCGCAGGCGATGCTTGGTGTATGAGCTTGTTCACAATGGCAGTGTTGAGTCGCATCTGCATGGGGTTGACAAGAAAAAAGGAACGCTTGATTGGGAAGCACGGATGAAAATTGCCCTAGGAGCTGCTAGGGGATTGGCCTATCTTCATGAGGATTCTAATCCTCGTGTAATTCACCGAGACTTCAAAGCTAGCAATGTGTTATTAGAGGATGATTTTACCCCCAAAGTTTCTGATTTTGGCTTGGCAAGAGAAGCAACTGAAGGAAGTAATCATATTTCAACACGGGTGATGGGAACTTTTGGGTATGTTGCCCCTGAATATGCGATGACAGGCCATTTACTTGTCAAAAGTGATGTTTATAGTTATGGCGTTGTGCTGCTTGAACTTCTCACAGGCAGAAAGCCAGTGGATATGTCCCAACCTCAGGGACAGGAAAATCTTGTAACTTGGGCACGGCCACTGTTGACAAGTAGAGAAGGTCTAGAACAGTTGGTGGATCCATCTTTGGCTGGAGGTTACAACTTTGATGACATGGCAAAGGTTGCTGCTATTGCTTCAATGTGTGTTCACCCGGAGGTCACACAGAGACCTTTCATGGGTGAAGTTGTGCAGGCTCTTAAGTTGATATACAATGACACAGACGAGACTTGTGGAGATTATTGTAGTCAGAAGGATTCCTCTGCTCAGGAGTCCGATTTTAGAGGTGACCTTGCCCCTTCTGATAGTAGTTGGTGGAATGCTGGAGGGTTAACCCCCCGATTAACTTATGGGCAAGCATCTTCCTTCATCACTATGGAATACAGTTCTGGTCCGCTTGAAGATATGGAAAACAGACCGTTTTCAACGTCAAGTTTGATTGGAGATGAAATATCTTTACCAATTAGGCATGGGAATAGATCAGGTCCCTTAAGAACAGTCCGAAGCAAGCTCTCCTTATATAGATTTACAGGAAGTCGGAGTGAGCATGGAGCACTTTCTTCCAAGCGTAATTGGAATGATGGTTCATGGGTTTGA 2247 0.437 MPVSVVFLVALLNFLFSSQVKSISLSVSFTSSEQAKMWLVKPSSGPSSAPVPSPSYQGPSATPRLKHHHHHRHHRSIRPYVVAPPPSKDQACDQICSDPLTSTPFGSPCGCVFPMKVRLTLYVAPYAVFPVMTELENEIALGTYLEQSQVKIMGASADSQNQGRTIVDINLVPLGEKFDNTTAALTYERFWHKKVPLNRSLFGDYAVVYITYPGMPSSPPYGTLVGSGPSQSVDGILPVSANFVSKNQKMNLRTIIIIALSSFVLLLVLVGAFSITLKWRRAKGPLSAVGPAFTSSLNKRSGLGSMLSSSIMSSTSVSLMSTMATSILSVKTFSLSDLEKATDKFNSKRVLGEGGFGRVYRGTLDDGAEVAVKLLTRDNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRRRCLVYELVHNGSVESHLHGVDKKKGTLDWEARMKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEDDFTPKVSDFGLAREATEGSNHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPQGQENLVTWARPLLTSREGLEQLVDPSLAGGYNFDDMAKVAAIASMCVHPEVTQRPFMGEVVQALKLIYNDTDETCGDYCSQKDSSAQESDFRGDLAPSDSSWWNAGGLTPRLTYGQASSFITMEYSSGPLEDMENRPFSTSSLIGDEISLPIRHGNRSGPLRTVRSKLSLYRFTGSRSEHGALSSKRNWNDGSWV* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0089 748 Gene3D Phosphorylase Kinase; domain 1 316 420 - -
Apr4g0089 748 ProSitePatterns Protein kinases ATP-binding region signature. 351 373 IPR017441 GO:0005524
Apr4g0089 748 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Apr4g0089 748 CDD STKc_IRAK 351 620 - -
Apr4g0089 748 ProSiteProfiles Protein kinase domain profile. 345 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g0089 748 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ALE2 5 745 - -
Apr4g0089 748 SUPERFAMILY Protein kinase-like (PK-like) 323 620 IPR011009 -
Apr4g0089 748 Gene3D Transferase(Phosphotransferase) domain 1 421 642 - -
Apr4g0089 748 MobiDBLite consensus disorder prediction 41 70 - -
Apr4g0089 748 PANTHER OS01G0750732 PROTEIN 5 745 - -
Apr4g0089 748 Pfam Protein tyrosine and serine/threonine kinase 347 616 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0089 Apr-Chr4 772511 778729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0089 95 734 Receptor kinase-like Gene Family AT5G56890 55.606 0.0 652
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Apr4g0089 PK_Tyr_Ser-Thr 4.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0089 - - gmx:100792309 1333.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0089 4 772511 778729 Apr4g0089 4 772511 778729 ECH