Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0084 ATGGCAACTCAAGGTCAAGTCATTACCTGCAAAGCTGCGGTGGCCTGGGAACCCAATAAGCCATTGACCATCGAAGATGTTCAGGTTGCTCCACCTCAGGCTGGTGAGGTTCGAATCCAAATCCTCTACACAGCTCTCTGTCATACCGATGCTTATACTTGGGGCGGCAAGGACCCAGAAGGTCTCTTTCCTTGTATTCTTGGTCATGAAGCTGCAGGGATTGTGGAAAGTGTTGGAGACGGTGTTACTGAAGTTCAGCCTGGCGATCATGTTATCCCCTGTTACCAGGCTGAGTGTAGAGAGTGTAAGTTTTGCAAATCGGGCAAGACAAACCTTTGTGGGAAGGTTCGTAGTGCCACTGGAGCTGGGGTCATGCTCAGCGATCGCAAGAGTCGTTTCTCTATTAATGGAAAGCCCATCTATCATTTCATGGGAACCTCCACGTTTAGTCAATACACAGTTGTGCACGATGTTAGTGTAGCTAAGATTGATCCACAGGCTCCTCTGGACAAAGTTTGTCTTCTTGGATGTGGTGTTGCGACTGGCCTTGGAGCTGTCTGGAACACTGCAAAAGTGGAGGCTGGGTCAATTGTTGCTATTTTTGGCCTTGGGACTGTTGGTCTTGCTGTTGCAGAGGGTGCAAAAACTGCTGGTGCATCACGGATTATTGGCATAGATATTGACAGTAAGAAGTTTGATGTAGCAAAGAACTTTGGAGTCACTGAGTTTATAAATCCAAATGAACATGAGAAACCAATTCAGCAGGTCATAATTGATCTCACGGATGGTGGAGTTGATTATAGCTTTGAATGCATCGGAAATGTCTCTGTGATGAGATCTGCTTTGGAATGCTGCCACAGGGGCTGGGGGACATCAGTTATTGTGGGTGTTGCTGCATCAGGGCAGGAAATATCAACTCGCCCTTTCCAGTTGGTGAGTGGACGTGTCTGGAAAGGAACGGCTTTTGGTGGCTTCAAGAGCAGGTCCCAAGTGCCTTGGCTTGTAGACAAGTACTTGAAAAAGGAAATCAAGGTTGACGAGTACATTACCCATAATGTGACACTTGCCGAGATCAACAAGGCTTTTGATCTTTTGCATGAAGGGGGATGTCTTCGCTGTGTGCTTGCAACACATTAA 1137 0.4705 MATQGQVITCKAAVAWEPNKPLTIEDVQVAPPQAGEVRIQILYTALCHTDAYTWGGKDPEGLFPCILGHEAAGIVESVGDGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGAGVMLSDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVATGLGAVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKFDVAKNFGVTEFINPNEHEKPIQQVIIDLTDGGVDYSFECIGNVSVMRSALECCHRGWGTSVIVGVAASGQEISTRPFQLVSGRVWKGTAFGGFKSRSQVPWLVDKYLKKEIKVDEYITHNVTLAEINKAFDLLHEGGCLRCVLATH* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0084 378 Pfam Alcohol dehydrogenase GroES-like domain 35 162 IPR013154 -
Apr4g0084 378 PANTHER ALCOHOL DEHYDROGENASE 3 377 - -
Apr4g0084 378 SUPERFAMILY GroES-like 326 375 IPR011032 -
Apr4g0084 378 PANTHER S-(HYDROXYMETHYL)GLUTATHIONE DEHYDROGENASE 3 377 - -
Apr4g0084 378 Gene3D - 13 372 - -
Apr4g0084 378 Gene3D - 182 320 - -
Apr4g0084 378 SUPERFAMILY GroES-like 3 198 IPR011032 -
Apr4g0084 378 TIGRFAM adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 10 375 IPR014183 GO:0006069|GO:0008270|GO:0051903
Apr4g0084 378 Pfam Zinc-binding dehydrogenase 206 330 IPR013149 -
Apr4g0084 378 CDD alcohol_DH_class_III 8 375 IPR014183 GO:0006069|GO:0008270|GO:0051903
Apr4g0084 378 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Apr4g0084 378 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 341 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0084 Apr-Chr4 734336 737456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0084 10 331 Monolignol Biosynthesis Gene Families AT1G72680 25.994 1.27e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0084 K00121 - gmx:100499743 736.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0084 4 734336 737456 Apr4g0084 4 734336 737456 ECH
Apr4g0084 4 734336 737456 Apr8g0374 8 3149802 3152757 PCT