Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0070 ATGTCTAAAGATGATAACGTCGTCCTCTCTTCACAGGATTCTTCCTCTGATCTTGAGTTGGGACTCGCCTTAAGCCTTTCTCCCTATGCCTCTCATTCCGATTCTCATTCTCCTCTACCCTCTAACTCTCCCAGTCAAGTAGTTGGATGGCCTCCCCTTGGAGTGTATAGAATGAACAGCTACAATAGCCATGCAAAATCACCAGCTGCAGAAATATTCAATTCTACAATTGAGAAAAGAGAGAGCAATGCTACTTTGGTAAGGAAGAGTGCAAATGGTGGCAGTGATAATGACAACATTATTGCCAAAGAAAAAAGAAGCCTTAGAAGTTCCTTGTTTGTGAAAGTAAAAATGGATGGGATACCAATTGGAAGGAAGGTTGATTTGAGTGCTCATAGTTCCTATAAAACCTTAGCTCAAACCTTGGAGCATATGTTCAATGAATCTACTACAGTCCACACTTGCAAAGGATCAAATGGAGAAGATTGTTGTACTATAGTTGGAGCAGATGGGCATTCAAAATTACTGGATGGTTCTTCTGACTTTGTGCTCACTTACGAAGACAAGGAAGGGGATTGGATGCTTGTTGGAGATGTTCCTTGGTGGATGTTCCTTAACTCTGTGAGGAGGCTAAGAATCATGAGGACACCTGAGGCTAATGGACTTGATTGGAAGAAAAGAACAGCAAATTGA 693 0.4156 MSKDDNVVLSSQDSSSDLELGLALSLSPYASHSDSHSPLPSNSPSQVVGWPPLGVYRMNSYNSHAKSPAAEIFNSTIEKRESNATLVRKSANGGSDNDNIIAKEKRSLRSSLFVKVKMDGIPIGRKVDLSAHSSYKTLAQTLEHMFNESTTVHTCKGSNGEDCCTIVGADGHSKLLDGSSDFVLTYEDKEGDWMLVGDVPWWMFLNSVRRLRIMRTPEANGLDWKKRTAN* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0070 230 SUPERFAMILY CAD & PB1 domains 107 214 - -
Apr4g0070 230 Pfam AUX/IAA family 40 222 IPR033389 -
Apr4g0070 230 Gene3D - 106 228 - -
Apr4g0070 230 PANTHER AUXIN-RESPONSIVE PROTEIN IAA11 25 224 - -
Apr4g0070 230 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 25 224 IPR003311 GO:0005634|GO:0006355
Apr4g0070 230 ProSiteProfiles PB1 domain profile. 111 218 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0070 Apr-Chr4 600144 603261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0070 60 213 B3 DNA Binding Superfamily AT4G23980 31.169 3.45e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Apr4g0070 AUX_IAA 9.2e-56 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0070 K14484 - gmx:100813788 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0070 4 600144 603261 Apr4g0070 4 600144 603261 ECH
Apr4g0070 4 600144 603261 Apr8g0366 8 3084381 3089664 PCT