Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0061 ATGGAAGCACGCCCTGCTTTCTCTGTTGAAAGATCAAGTGCAAAGCAACTCAATAACATGGGGTCTGAAGCACTGCCTTCATCCATGCCTGTCCTCCCAAAGCCTCTAGAAGAGACCTGCCCCAAATTATCTGATTCTCAGCTAGCTTTTATGGAGAAAGAGCTTAAAACAAGACCTTTCACTCATTCAAGTAATTTAAATTCCAGCGGAGCAGTTGGGCATTTGTTCTCATCTTCCCCAGGATATTCAACTGATCTTCATCACTCATCCTTTTCACCTCATGAAAAACACAGTAGAAGTACTCATTTTATTTCACAGTCATTGAGTAACATGGCCTCATTGCCCTTATCTTATTCTTCAAATAGTGGAGCAATACCTTCTACAGCATCAACCCCTTATTCCAATGGAAACAGTGTTTCCTGGCATACAGATTCCCTGCCTAGCTTTCTTGATTTCCCTGGTAATACCTCCATTGATAATAGTCAAGTAGAGAGCAGCGCCTGCAATATTATGGCAACTGAAGAGTATTCTAAGCGAAGTGATTGGCAGGAGTGGGCTGACCAGCTAATCAGTGATGATGATCCTTTGACTTCTAATTGGAATGATCTTCTTTCTGACAACATTCAAGATCTTGAACCAAAGGTCTCAAAATCGTCTTCACAACTGCCAACAGGACATCAATCCCAAGGCCATCAACAACTTCCTACTTCATCTGGAGAAAATCGTGTGGGTGCTGCCCCATCTTCGTCAGCAAATTCTGCTCCTGCCAAACCACGGATGCGCTGGACACCTGAGCTTCATGAGGCATTTGTGGAGGCTGTCAATCAACTTGGTGGGAGTGAAAGAGCTACCCCTAAGGGTGTACTGAAGCTCATGAAAGTTGAAGGATTAACTATATATCATGTTAAAAGCCACTTACAGAAATACAGGACAGCTAGATTTAGACCAGAATCATCTGAAGGAACTGCAGAGAAAAAACTAAATCCCATTGAAGAAATGTCATCTTTAGATTTGAAAACTGGTATTGAGATCACTGAAGCTCTGCGACTGCAGATGGAAGTTCAGAAACGGTTGCATGAACAGCTTGAGATTCAAAGAAATCTCCAGTTGCGAATAGAAGAACAAGGAAGGTACCTTCAGATGATGTTTGAGAAGCAGTGTAAATCTGGCATTGAAACATTTAAGGCATCATCTTCTGCCATTGACAGTCCATCTGCAGTGTCTTCTGATGCCATGAAAGATTCACCCGCCAAAACAGAATTAGATGCCTCCAAAGTGGACCATTATAAGCCAGGATCTGACCAAGCTAATGACAGTATCACGGTTGAGGAAACCTCACAGGAAGTGGGTGGGAAGCAGTATGCTCCCAAAAGTCAAGCTTCTGAGAATCCTAAGCAACATGCTAGTGAAGATAGTCCTCAAGCCCCAAAGCGTGCAAGGACAGACGAGTAA 1452 0.4311 MEARPAFSVERSSAKQLNNMGSEALPSSMPVLPKPLEETCPKLSDSQLAFMEKELKTRPFTHSSNLNSSGAVGHLFSSSPGYSTDLHHSSFSPHEKHSRSTHFISQSLSNMASLPLSYSSNSGAIPSTASTPYSNGNSVSWHTDSLPSFLDFPGNTSIDNSQVESSACNIMATEEYSKRSDWQEWADQLISDDDPLTSNWNDLLSDNIQDLEPKVSKSSSQLPTGHQSQGHQQLPTSSGENRVGAAPSSSANSAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARFRPESSEGTAEKKLNPIEEMSSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGIETFKASSSAIDSPSAVSSDAMKDSPAKTELDASKVDHYKPGSDQANDSITVEETSQEVGGKQYAPKSQASENPKQHASEDSPQAPKRARTDE* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0061 483 MobiDBLite consensus disorder prediction 213 256 - -
Apr4g0061 483 Pfam MYB-CC type transfactor, LHEQLE motif 342 389 IPR025756 -
Apr4g0061 483 MobiDBLite consensus disorder prediction 396 483 - -
Apr4g0061 483 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 257 311 IPR006447 GO:0003677
Apr4g0061 483 MobiDBLite consensus disorder prediction 1 38 - -
Apr4g0061 483 MobiDBLite consensus disorder prediction 434 470 - -
Apr4g0061 483 MobiDBLite consensus disorder prediction 415 432 - -
Apr4g0061 483 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 52 483 IPR044848 GO:0003700
Apr4g0061 483 PANTHER PROTEIN PHR1-LIKE 1-LIKE ISOFORM X1 52 483 - -
Apr4g0061 483 Pfam Myb-like DNA-binding domain 259 310 IPR001005 -
Apr4g0061 483 Gene3D - 256 315 - -
Apr4g0061 483 SUPERFAMILY Homeodomain-like 255 311 IPR009057 -
Apr4g0061 483 MobiDBLite consensus disorder prediction 396 412 - -
Apr4g0061 483 Coils Coil 345 365 - -
Apr4g0061 483 MobiDBLite consensus disorder prediction 11 25 - -
Apr4g0061 483 MobiDBLite consensus disorder prediction 213 259 - -
Apr4g0061 483 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 254 314 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0061 Apr-Chr4 533597 541100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0061 1 399 G2-like Transcription Factor Family AT4G28610 52.206 2.38e-110 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Apr4g0061 Myb_DNA-binding 9.1e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0061 - - gmx:100810560 806.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0061 4 533597 541100 Apr4g0061 4 533597 541100 ECH
Apr8g0360 8 3043705 3050937 Apr4g0061 4 533597 541100 ECH
Apr4g0061 4 533597 541100 Apr8g0360 8 3043705 3050937 PCT