Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0060 ATGCCAGAACCCAGTAAGTGTTTACTATCTGGGGAGATATCATTTGAACTTGGCAATCTGTTCTCACTTCAAATCTTGTTAGACCTCAGCAGCAACTCTCTTTCTGGGGAAATTCCTGAAAACCTTGGCAAGTTAGTATCATTGGAGATTCTGAATGTCTCACACAACCATCTATCAGGGATAATCCCACAATCCTTTTCAACCATGCTCAGCCTTCAATCTATTGATTTTTCTTACAACAACTTGAGTGGTTTAATCCCCACAGGTGGTGTTTTACGGATAGCAACTAATGATGCCTATGTTGGGAACTCAGGTTTGTGTGGTGAGGGTCAACAAAAAGGTTGTTCTTTCTGTTGGTATACCTGTTTGTGTGTTATTTATTGGCTTCTTGGTATTGGAATCCTACTATTTCAACGACAAGCCAAACACAACGATGAAGAGGCTAAAATCATCAAAAAAATTGATCAGTCGATTGTGCAGGGAAGAGATGGAACATTCACATTTTCTGAACTTGTCAAGGTCACCGATGACTCTGACGACAAGTACTGCATTGGACAAGGAGGCCCAGCAGTGAACCACCACAGCCTTGAGAATGAGGTAAGATCACTTACAGAAGTGAGGCATCGCAACATAATAAAGCGCTCTGAATTTTGTTCTTGGAGGAGACAGATGTTCCTAGCTTATGAATACGTACAAAGAGGAAGTTTGAGGAAAGTACTGTATGGTGAGGAAGGAAAATTGGTGCTGAACAGGGCTACAAGGGTGAAAATTGTGCAAGGAATAGCACATGCAATTTCATACCTTCACACTGACTGTTCTCCACCCACTGTGCACCGTGATGTTACATTGAACAGCATACTACTGGACACAGAATTTGAACCTCGCCTTGCAGATTTTGGCACTGCCAAGCTTCTAAGCTCTAACACTTCAACCTGGACCTCAGTTGCTGGATCCTATGGCTACATGGCCCCAGCACAAACTATGAGGGTCATTGACAAGTGTGACGTTTATAGTTTTGGAGTGGTGGCATTGGAGATAATAATGGGAAAGCACCCCGGAGAACTCTTGGCTACCCTATCTTCAAAGCAGTCCTTTTCATCAACACAAGTGCTCCTGAAGGACTTGCTTGACCAACAGCTTCCACCTCCAACAGGCCAATTAGCTAAAGCAGTAGTGTTCACATCACAGTGA 1191 0.4324 MPEPSKCLLSGEISFELGNLFSLQILLDLSSNSLSGEIPENLGKLVSLEILNVSHNHLSGIIPQSFSTMLSLQSIDFSYNNLSGLIPTGGVLRIATNDAYVGNSGLCGEGQQKGCSFCWYTCLCVIYWLLGIGILLFQRQAKHNDEEAKIIKKIDQSIVQGRDGTFTFSELVKVTDDSDDKYCIGQGGPAVNHHSLENEVRSLTEVRHRNIIKRSEFCSWRRQMFLAYEYVQRGSLRKVLYGEEGKLVLNRATRVKIVQGIAHAISYLHTDCSPPTVHRDVTLNSILLDTEFEPRLADFGTAKLLSSNTSTWTSVAGSYGYMAPAQTMRVIDKCDVYSFGVVALEIIMGKHPGELLATLSSKQSFSSTQVLLKDLLDQQLPPPTGQLAKAVVFTSQ* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0060 396 SUPERFAMILY Protein kinase-like (PK-like) 160 356 IPR011009 -
Apr4g0060 396 ProSiteProfiles Leucine-rich repeat profile. 47 68 IPR001611 GO:0005515
Apr4g0060 396 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 6 391 - -
Apr4g0060 396 Gene3D Ribonuclease Inhibitor 3 117 IPR032675 -
Apr4g0060 396 ProSiteProfiles Protein kinase domain profile. 124 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g0060 396 Gene3D Transferase(Phosphotransferase) domain 1 165 388 - -
Apr4g0060 396 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 6 391 - -
Apr4g0060 396 Pfam Leucine rich repeat 47 87 IPR001611 GO:0005515
Apr4g0060 396 SUPERFAMILY L domain-like 6 93 - -
Apr4g0060 396 Pfam Protein kinase domain 193 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0060 Apr-Chr4 530700 532212 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0060 9 98 Receptor kinase-like Gene Family AT4G08850 38.144 1.48e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Apr4g0060 Pkinase 4.4e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0060 - - aprc:113860773 779.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0060 4 530700 532212 Apr4g0060 4 530700 532212 ECH