Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0059 ATGACAACTTTTCAAAAGCTTAATGATCTTATTTTTCATATACTCTTGATATCTTTGCTTACACTGAAAACCACTGCATCACCAAGAACAGAAGCAGAAACCCTTGTCAAATGGAAAAACACTCTATCTCCTCCTCTTTCTCCCTCTCTAAACTCATGGTCCCTAACCAACCTTGGCAACCTTTGCAAGTGGGATGCCATTGTTTGTGACAACACTAACACTACTGTCTCAGAGATAAACTTCTCTGGTGCCAATCTCAATGGGACACTCACAAGTTTGGATTTTGCTTCCCTCCCCAGCCTCACACGCCTCAACCTCAATGGCAACAGTTTTGGTGGGTCAATACCACCATCTATTGGCAACCTTTCCAAGCTCATTTTCTTGGACTTTGGTAACAACCTTTTTGAAGACTCACTGCCTTATGAGTTAGGCCAGCTAAGGGAACTTCAATATCTTAATTTTTACAACAACAGCCTCAAAGGTATTATTCCGTATCAGCTCATGAATCTCCCTAAGTTATGGTACCTTGACCTTGGATCAAACTACTTTACAACTCCTCATGACTGGTCCCAATATTCATGCATGCCTTCCTTAACTCACCTTGCTTTGCATATCAATAGTTTTACTGCTGAATTCCCAAGTTTCATACTGAAGTGTAAGAACATGACATACCTTGACCTCTCTCAGAATAACTGGGGTGGCACAATACCAGAATCCATGTATAGCAACTTAGTCAAGCTTGAATACCTTAACCTCACCAACTGTTGGCTAGAAGGAAAACTTTCATCCAACTTGTCTATGCTCTCTAATCTCAAAGAACTTCGTATGGGTAATAACATGTTTTATGGTTCTATTCCTACAGAGATAGGATTGATATCTAGGCTTCAAATTCTTGAGTTGAATAACATTTCAGCCCATGGGAAAATTCCTTCTTCCTTAGGCCAACTTAAGGAGCTTCAGAGTCTTGATCTTAGAAATAATTTTTTGAACTCTACAATTCCTTCTGAGCTTGGCCTATGCACAAATCTTACCTTCCTGAGTTTAGCAGTGAATAATCTGACTGGTCCTTTGCCTTTGTCATTATCTAATCTGACCAAAATATCACAACTAGGATTATCTGAAAATTTACTTTCTGGTCAAATATCACCTTCATTGATCTCTTATTGGGCTGAGTTGATCTCTTTGCAAGTCCAAAACAATAAATTTAAAGGAAAGGTTCCTCCACAGATTGGCCTATTGAAAAAAATTAATCGCATCTATATGTACAAGAACATGTTCTCTGGTCCCATTCCTGTAGAGATTGGAAACCTGAAAGAAATGATAGAGTTAGACCTTTCAGGAAACTACTTTTCCGGTCCAATTCCATCAACAATTTGGAATCTGACAAACATTACAGTCATAAATCTTTTCTTCAACAATCTCTCTGGAACCATTCCAGTTGATATTGGAAACTTAACCTCACTGCAAACCTTTGATGTCAACACCAATAGCTTGCATGGAGAGTTGCCAGAAACCATTTCTCAACTAACTGCTTTAATTCACTTTTCTGTGTTCACCAATAACTTCTCTGGCAGCATTCCAAGCGAATTTGGAAAGAATAATCCTTCTTTGACTACTGTATATCTTTCAAACAACAGCTTCTCAGGAGAACTGCCTCGTGACTTGTGCAGTCATGGCAAGTTAGCAGCTTTGGCAGTCAATAACAACAGCTTTTCAGGGCCACTGCCAAAGTCGTTGAGAAATTGTTCATCACTCAGTAGAGTTAGGCTTGATGATAACCAATTAACTGGAAACATCACAGAAGCATTTGGGGTTCTTACAAAACTTGTGTTTATCTCACTAAGCAGAAATCAGCTTGTTGGAGAGCTCTCTCCAGAATGGGGTGAATGTGTCAACTTAACTGCGATGGAAATGAGTGGAAACAAACTTTCCGGAAAAATTCCATCTCAGTTGAGCAATTTGAGTAGATTGGAATACCTAAGCCTGCATTCAAATGCATTCACTGGCAATATCCCTCCTGAAATTGGAAATCTAAGCCTGCTCTACAAGTTGAACTTGAGCAGTAACCATTTTTCAGGAGAAATCCCAGAGAGTATTGGCAGATTGGGTAGGCTAAATCTACTTGATTTATCAGATAACAACTTCAGTGGAAACATTCCTAAGGAGCTCGGTGACTGTAACCGCTTACTGAGCCTGAATTTAAGCCACAACAGTCTATCTGGGGAGATACCATATGAACTTGGCAATCTGTTCTCACTTCAAATCTTGTTAGACCTCAGCAGCAACTCTCTTTCTGGGGAAATTCCTGAAAACCTTGACAAGTTAGTCTCATTGGAGATTCTGAATGTCTCACACAACCATCTATCAGGGATAATCCCACAATCCTTTTCAACCATGCTCAGCCTTCAATCTATTGATTTTTCTTACAACAACTTGAGTGGTTTAATCCCCACAGGTGGTGTTTTCCAGATAGCAACTAGTGATGCCTATGTTGGGAACTCAGGTTTGTGTGGTGAGGTAAAAGGATTAACTTGCCCCAAACACAAATCCAGGGTCAACAAAAAGGTTCTTCTTGGTGTTATTATACCAGTTTGTGGGTTATTTATTGGGATGATTTGTGCTGGAATCCTACTGTTCCGAAGGCAAGCCAAACAACACCTTGATAAGGAGTCCAAAAACATTGAAAAAAGTGATCAGTCTATTAGCTTGGTATGGGGAAGAGATGGACAATTCACATTTTCTGATCTTGTTAAGGTCACTGATGACTTCAATGAGAAGTACTGCATTGGAAAAGGAGGATTTGGAAGTGTTTATAAAGCACAATTACTTACTGGTCAAGTTGTTGCTGTTAAAAGGCTCAATATATCAGACTCTGATGACATTCCAGCAGTGAACCGGCAAAGCTTTTTGAATGAGATAAAATCACTTACAAGAGTGAGGCACCGCAATATAATAAAGCTATATGGGTTCTGTTCTAGTAGGAAACAAATGTTCTTGGTTTATGAATATGTAGATAGAGGAAGTTTGGGGAAAGTACTGTATGGAGAGGATGGGAACTTGGTGCTGAACTGGGCTACAAGGGTGAAAATTGTGCAAGGAATTGCACATGCAATTTCATATCTTCACACTGACTGTTCTCCACCCATTGTGCACCGTGATGTTACATTGAACAACATACTCCTAGACACAGACTTTGAGCCTCGTCTTGCAGATTTTGGCACTGCCAAGCTTCTAAGCTCTAACACTTCAACCTGGACCTCAGTTGCTGGATCCTATGGCTACATGGCTCCAGAGCTAGCACAAACTATGAGGGTCACTGACAAGTGTGATGTTTATAGTTTTGGAGTGGTAGTGTTGGAGATAATGATGGGAAAACACCCTGGAGAACTCTTGGGTAACCTTTCTTCGAACAAATCTTTGTTATCAATGGAGGATCCACAGGTGTTTCTGAAGGATGTTCTTGACCAACGGCTTCCACCTCCAACAGGCTATTTAGCTGAGGCAGTGGTGTTCACAGTGACTGTAGCTTTGGCATGCACACGTGCAGCTCCAGAGTCCAGACCCGTGATGCGTGCTGTGGCACAAGAACTATCAGCTACTACACAGGCTTGTCTTTCCGAGCCATTTGGCATGATAACCATAAGCAAGCTTACAGGGTTCCAGAAATAG 3669 0.4064 MTTFQKLNDLIFHILLISLLTLKTTASPRTEAETLVKWKNTLSPPLSPSLNSWSLTNLGNLCKWDAIVCDNTNTTVSEINFSGANLNGTLTSLDFASLPSLTRLNLNGNSFGGSIPPSIGNLSKLIFLDFGNNLFEDSLPYELGQLRELQYLNFYNNSLKGIIPYQLMNLPKLWYLDLGSNYFTTPHDWSQYSCMPSLTHLALHINSFTAEFPSFILKCKNMTYLDLSQNNWGGTIPESMYSNLVKLEYLNLTNCWLEGKLSSNLSMLSNLKELRMGNNMFYGSIPTEIGLISRLQILELNNISAHGKIPSSLGQLKELQSLDLRNNFLNSTIPSELGLCTNLTFLSLAVNNLTGPLPLSLSNLTKISQLGLSENLLSGQISPSLISYWAELISLQVQNNKFKGKVPPQIGLLKKINRIYMYKNMFSGPIPVEIGNLKEMIELDLSGNYFSGPIPSTIWNLTNITVINLFFNNLSGTIPVDIGNLTSLQTFDVNTNSLHGELPETISQLTALIHFSVFTNNFSGSIPSEFGKNNPSLTTVYLSNNSFSGELPRDLCSHGKLAALAVNNNSFSGPLPKSLRNCSSLSRVRLDDNQLTGNITEAFGVLTKLVFISLSRNQLVGELSPEWGECVNLTAMEMSGNKLSGKIPSQLSNLSRLEYLSLHSNAFTGNIPPEIGNLSLLYKLNLSSNHFSGEIPESIGRLGRLNLLDLSDNNFSGNIPKELGDCNRLLSLNLSHNSLSGEIPYELGNLFSLQILLDLSSNSLSGEIPENLDKLVSLEILNVSHNHLSGIIPQSFSTMLSLQSIDFSYNNLSGLIPTGGVFQIATSDAYVGNSGLCGEVKGLTCPKHKSRVNKKVLLGVIIPVCGLFIGMICAGILLFRRQAKQHLDKESKNIEKSDQSISLVWGRDGQFTFSDLVKVTDDFNEKYCIGKGGFGSVYKAQLLTGQVVAVKRLNISDSDDIPAVNRQSFLNEIKSLTRVRHRNIIKLYGFCSSRKQMFLVYEYVDRGSLGKVLYGEDGNLVLNWATRVKIVQGIAHAISYLHTDCSPPIVHRDVTLNNILLDTDFEPRLADFGTAKLLSSNTSTWTSVAGSYGYMAPELAQTMRVTDKCDVYSFGVVVLEIMMGKHPGELLGNLSSNKSLLSMEDPQVFLKDVLDQRLPPPTGYLAEAVVFTVTVALACTRAAPESRPVMRAVAQELSATTQACLSEPFGMITISKLTGFQK* 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0059 1222 SUPERFAMILY Protein kinase-like (PK-like) 904 1197 IPR011009 -
Apr4g0059 1222 SUPERFAMILY RNI-like 78 403 - -
Apr4g0059 1222 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 149 338 - -
Apr4g0059 1222 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 288 672 - -
Apr4g0059 1222 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 657 1201 - -
Apr4g0059 1222 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 14 184 - -
Apr4g0059 1222 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 612 792 - -
Apr4g0059 1222 ProSitePatterns Protein kinases ATP-binding region signature. 929 951 IPR017441 GO:0005524
Apr4g0059 1222 ProSiteProfiles Leucine-rich repeat profile. 777 798 IPR001611 GO:0005515
Apr4g0059 1222 Gene3D Ribonuclease Inhibitor 28 192 IPR032675 -
Apr4g0059 1222 CDD STKc_IRAK 929 1197 - -
Apr4g0059 1222 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Apr4g0059 1222 Pfam Leucine Rich Repeat 100 122 IPR001611 GO:0005515
Apr4g0059 1222 Gene3D Ribonuclease Inhibitor 193 242 IPR032675 -
Apr4g0059 1222 ProSiteProfiles Protein kinase domain profile. 923 1210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g0059 1222 SUPERFAMILY L domain-like 386 573 - -
Apr4g0059 1222 SMART LRR_typ_2 195 219 IPR003591 -
Apr4g0059 1222 SMART LRR_typ_2 268 292 IPR003591 -
Apr4g0059 1222 SMART LRR_typ_2 485 509 IPR003591 -
Apr4g0059 1222 SMART LRR_typ_2 146 169 IPR003591 -
Apr4g0059 1222 SMART LRR_typ_2 316 340 IPR003591 -
Apr4g0059 1222 SMART LRR_typ_2 437 461 IPR003591 -
Apr4g0059 1222 SMART LRR_typ_2 702 726 IPR003591 -
Apr4g0059 1222 SMART LRR_typ_2 606 630 IPR003591 -
Apr4g0059 1222 SMART LRR_typ_2 535 558 IPR003591 -
Apr4g0059 1222 SMART LRR_typ_2 654 678 IPR003591 -
Apr4g0059 1222 SMART LRR_typ_2 98 122 IPR003591 -
Apr4g0059 1222 SMART LRR_typ_2 775 798 IPR003591 -
Apr4g0059 1222 Pfam Protein kinase domain 925 1129 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g0059 1222 Gene3D Phosphorylase Kinase; domain 1 883 1003 - -
Apr4g0059 1222 Gene3D Transferase(Phosphotransferase) domain 1 1004 1207 - -
Apr4g0059 1222 SUPERFAMILY L domain-like 533 824 - -
Apr4g0059 1222 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1049 1061 IPR008266 GO:0004672|GO:0006468
Apr4g0059 1222 Gene3D Ribonuclease Inhibitor 481 848 IPR032675 -
Apr4g0059 1222 Gene3D Ribonuclease Inhibitor 243 480 IPR032675 -
Apr4g0059 1222 Pfam Leucine rich repeat 196 255 IPR001611 GO:0005515
Apr4g0059 1222 Pfam Leucine rich repeat 777 817 IPR001611 GO:0005515
Apr4g0059 1222 PANTHER OS01G0515300 PROTEIN 612 792 - -
Apr4g0059 1222 PANTHER OS01G0515300 PROTEIN 657 1201 - -
Apr4g0059 1222 PANTHER OS01G0515300 PROTEIN 149 338 - -
Apr4g0059 1222 PANTHER OS01G0515300 PROTEIN 288 672 - -
Apr4g0059 1222 PANTHER OS01G0515300 PROTEIN 14 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0059 Apr-Chr4 525198 529759 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0059 1 697 Receptor kinase-like Gene Family AT4G08850 31.624 2.06e-82 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Apr4g0059 Pkinase 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0059 - - gmx:100809137 1911.35