Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0058 ATGAAGGAAACTTGTCAGCTGATAATTTTCTCTCTGGTTTTGTCTTGTACACTTGTAGAGATTTCAGCACAGAAAGAAGCAGAATCTCTGATAACCTGGATGAAGAGCTTGCACTCTCCCTTGCCACGTTCATGGAACAAAAGCACTAGTCCATGCAAATGGAATGGCATTACATGTGACAAAACCGGCAGTGTTGTTGAGATAAAGCTTTCTAATGTTGGCCTAGATGGAACGCTTGACAGGTTTGACTTCTCAGCCTTTCCTAATCTCAGTAACTTCAATGTAAGTATGAATAACCTGGTTGGAGAGATACCAGCAGGAATTGGAAATGTAACAAAGATGAAAATACTTGATTTGAGTAGCAACAATATCACCTATCCAATCCCCCCAGAAATGGGAAACCTTCTAGAGCTGCAAGTTCTTGTACTCTCTAACAATTCACTCTTAAAACAAATACCAACTCAACTTAGCAATTTGCAGAATTTATGGCTTCTAGATCTAGGGGCTAATTATTTGGAGAATCCTGACCCTGTTCAATTTAAGGGCATGGCATCCATAATTGAACTTAATCTCACCTATAACTTCCTCACTGAGGTTCCTCCATTTGTTTCTAAATGTCCAAAGCTGGTGTCTCTTGATGTATCACTCAATAGTATCTCTGGGAAGATTCCAATACATTTACTGGTTAATCTTAGGAATCTTACAATCCTATGCATGACAAACAACAATTTAGAAGGGCTAATTCCAGAAGAAATTAAGAGCCTATCAAACCTCAAAAAACTACAGCTTGGACAAAACAAGCTTAATGGTACAATACCAGAGGAGATAGGTCTCTTGTCATACCTTGAGGTGCTTGAATTGAATCAAAATTCTTTTCAGGGTCCAATACCATCATCAATTGGAAATCTCCTTATGCTTCAGAGATTAGATATTCACATGTCAGGGCTTAATTCCAGCATCCCAGCTGAGATAGGCTTCTGCACCAACCTTACTTATGTTGATATGTCAGGAAATAGCCTGACAGGTTCTGTGCCTCTTTCCATGGCTTCATTAACAAGGATCCAAGAGTTGGCAATCTCTTTTAACCTTTTATCTGGAGAACTTCATCCATCTCTTCTGTCCAGTTGGTCAGAACTCAATTCTTTGCAACTCCAGTTGAATGACCTATCAGGAATTCTTCCACCTGAGATTGGTTCACTTCACAATATAACTACTTTGCTCCTTTTCTCCAACCAGTTTTCTGGCCAGATACCTCCAGAAATTGGAAACTTATCAAACTTACAATATCTTGATCTGTCCTATAACTCTTTTAATGGTTCGATACCCCCAACTATAGGAAAGTTACACAATATCCTCAATTTAACTCTAGCTTCAAACCAACTAACAGGGGGCTTTCCTCCTGAAATAGGTGATTTGGAAAGCTTACAAGTGCTGGACTTGAGTGAAAACAAATTTGAAGGACCTTTGCCTTCATCAATAATTCGCTTGAAAAATATCAGTCTCCTTTACCTTCATTCCAACAATTTTTCAGGAACTATTCCTGAAGATTTTGGACCTACCTTTTTAATGAATGTGAGCTTTGCCAACAATAGCTTTTTTGGAAGGCTCCCCTCAGGAATTTGCAATGGAGGGAACCTTGTCTACTTGGCAGCCAGTATGAATTATCTAATTGGTCCAATCCCAGAAAGTCTTAGAAATTGCAGCGGACTAATCAGAGTCCTGCTTGGAAACAATCATCTCACTGGAGACATTGCCAATGCATTTGGCATCTACCCAGATTTGGACTTCATTGATTTAGGACATAATCAGCTCTATGGTTCATTATCTAGTAACTGGGGAGAGTGCAAAACTCTCACCAGTTTAAGCATAGCTGCCAATAAGCTACAAGGGAATATTCCTCCTGAGATAGGAAAATTGCCAAGGTTACAAAATCTTGACCTATCAGATAACAGTCTCACAGGAAATATCCCAGTGGAGCTTTTCAGCTCATCTTCCATTCTACTCAAACTAAATTTGAGCAACAATGATCTCTCAGGTCAGATACCAGAAGGGATAGGGGAACTCTCACAGATGCAGTATCTGGATTTATCATCAAACAATATAAGTGGGCCAATTCCCAGGAAACTAGGAAACTGCCAGAAACTTATATTCTTGAAACTAAGTATGAACAACTTGGATGGACATATGCCATATGAGCTTGGGAATTTGGTGAACTTGCAGCCACTGTTAGATCTCAGTCACAACTCACTGACTGGACAGATAATCACACAGTTGGAAAATTTGATATCCTTGGAGGTTTTGAATCTTTCTCATAATCAGCTTTCTGCGACAATACCTTCTGGTCTCAATGGACTTATCAGCCTTCAGTCAGTTGATATATCCTACAACAAACTTGAAGGTCCCCTCCCAGAACTAAAAGCATTTCATAATGCTCCAGCAGAAGCACTGATTGGTAATGCCGGTCTGTGTGCTGATCCTGGTGGCAATGCAAATCTGAGTCCATGTGGTGGAGAAAAAACCAACGAAGTTAATAAACATAAGCTGGTAATTGCTGTAGTCATTCCACTTGCTGCTTTAATCATTCTATTGGTTTCCCTTCGAGTCTTCTTTTTCTGGCAATATCATAGAGTTGATCAAGATGAAAAGGAAAAGATTTCAAATGGAAAGACCACATTATTCATATGGAATTATAGGAATATGATAGAGTTCAAGGACATATGCATTGCAACTGAGAATTTCAGTGATAAGTATTGCATAGGGATAGGAGGACAAGGTAGTGTATACAAGGCAGTGCTTCCAACAGGTGAAACTTTGGCAGTGAAACGTCTTCACCAACATGAGGAAATGGACTTCTCTGGACACCTAACAAAGAACTTCACATCTGAAATTCATGCAATGACTAATGTTCGCCATCGAAATATTGTAACAATGTGTGGATTTAGTTACTGTTATGGGTCCATGTTTTTCATATATGAGTATGTGGAAAGAGGCTCTTTGGAAAAGGTGCTGCAGAAGGAACAAGAGGCAAAGTTCTTGACCTGGGACATGAGGCTAAACATGATAAAAGGGTTGGCAAATGCATTGTCTTATCTGCACCATGATTGCATACCCAGCGTTGTTCACAGAGACATTTCAGGAAACAATGTTCTGTTGGACACAGAATATGAACCTAAGATCTCAGACTTTGGTACAGCAAGGTTGCTTAACAAAGGAGAATCAAATTGGACAGCACCAGCTGGATCATATGGCTATATGGCACCAGAGCTAGCATTTGCAAGGAAGCTGACAGAAAAATGTGACGTTTACAGTTTTGGAATTGTTGCATTGGAAATTATGGTAGGGAGGTACCCTTATGAGCTCCTATTGTGCTTAGAGTCTGGAGAATTTGATCTACAACAGTTTATAGATTTCTTAGATAAGAGACTAGCTCCTCCTGAAGGTCCTGAAGTCCAACTCTTAATGCTGGTTGCAACCCTGATCCTAAAATGTATTGACAAAGATCCTTTGTATCGACCCACCATGCATCATGTGTCCCAAATGTTGCTCACTCTCTGTCCCTAG 3561 0.3979 MKETCQLIIFSLVLSCTLVEISAQKEAESLITWMKSLHSPLPRSWNKSTSPCKWNGITCDKTGSVVEIKLSNVGLDGTLDRFDFSAFPNLSNFNVSMNNLVGEIPAGIGNVTKMKILDLSSNNITYPIPPEMGNLLELQVLVLSNNSLLKQIPTQLSNLQNLWLLDLGANYLENPDPVQFKGMASIIELNLTYNFLTEVPPFVSKCPKLVSLDVSLNSISGKIPIHLLVNLRNLTILCMTNNNLEGLIPEEIKSLSNLKKLQLGQNKLNGTIPEEIGLLSYLEVLELNQNSFQGPIPSSIGNLLMLQRLDIHMSGLNSSIPAEIGFCTNLTYVDMSGNSLTGSVPLSMASLTRIQELAISFNLLSGELHPSLLSSWSELNSLQLQLNDLSGILPPEIGSLHNITTLLLFSNQFSGQIPPEIGNLSNLQYLDLSYNSFNGSIPPTIGKLHNILNLTLASNQLTGGFPPEIGDLESLQVLDLSENKFEGPLPSSIIRLKNISLLYLHSNNFSGTIPEDFGPTFLMNVSFANNSFFGRLPSGICNGGNLVYLAASMNYLIGPIPESLRNCSGLIRVLLGNNHLTGDIANAFGIYPDLDFIDLGHNQLYGSLSSNWGECKTLTSLSIAANKLQGNIPPEIGKLPRLQNLDLSDNSLTGNIPVELFSSSSILLKLNLSNNDLSGQIPEGIGELSQMQYLDLSSNNISGPIPRKLGNCQKLIFLKLSMNNLDGHMPYELGNLVNLQPLLDLSHNSLTGQIITQLENLISLEVLNLSHNQLSATIPSGLNGLISLQSVDISYNKLEGPLPELKAFHNAPAEALIGNAGLCADPGGNANLSPCGGEKTNEVNKHKLVIAVVIPLAALIILLVSLRVFFFWQYHRVDQDEKEKISNGKTTLFIWNYRNMIEFKDICIATENFSDKYCIGIGGQGSVYKAVLPTGETLAVKRLHQHEEMDFSGHLTKNFTSEIHAMTNVRHRNIVTMCGFSYCYGSMFFIYEYVERGSLEKVLQKEQEAKFLTWDMRLNMIKGLANALSYLHHDCIPSVVHRDISGNNVLLDTEYEPKISDFGTARLLNKGESNWTAPAGSYGYMAPELAFARKLTEKCDVYSFGIVALEIMVGRYPYELLLCLESGEFDLQQFIDFLDKRLAPPEGPEVQLLMLVATLILKCIDKDPLYRPTMHHVSQMLLTLCP* 1187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0058 1186 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Apr4g0058 1186 SUPERFAMILY Protein kinase-like (PK-like) 891 1181 IPR011009 -
Apr4g0058 1186 Pfam Leucine rich repeat 161 219 IPR001611 GO:0005515
Apr4g0058 1186 Pfam Leucine rich repeat 640 701 IPR001611 GO:0005515
Apr4g0058 1186 SUPERFAMILY RNI-like 520 803 - -
Apr4g0058 1186 SUPERFAMILY L domain-like 35 366 - -
Apr4g0058 1186 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1039 1051 IPR008266 GO:0004672|GO:0006468
Apr4g0058 1186 PANTHER - 161 252 - -
Apr4g0058 1186 PANTHER - 8 169 - -
Apr4g0058 1186 PANTHER - 256 1181 - -
Apr4g0058 1186 Pfam Leucine Rich Repeat 426 448 IPR001611 GO:0005515
Apr4g0058 1186 SUPERFAMILY RNI-like 279 514 - -
Apr4g0058 1186 ProSiteProfiles Protein kinase domain profile. 913 1182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g0058 1186 Pfam Leucine rich repeat N-terminal domain 24 60 IPR013210 -
Apr4g0058 1186 Gene3D Ribonuclease Inhibitor 271 369 IPR032675 -
Apr4g0058 1186 Gene3D Ribonuclease Inhibitor 181 270 IPR032675 -
Apr4g0058 1186 Gene3D Ribonuclease Inhibitor 24 180 IPR032675 -
Apr4g0058 1186 Gene3D Phosphorylase Kinase; domain 1 875 993 - -
Apr4g0058 1186 Pfam Leucine Rich repeats (2 copies) 763 805 IPR025875 -
Apr4g0058 1186 PRINTS Leucine-rich repeat signature 642 655 - -
Apr4g0058 1186 PRINTS Leucine-rich repeat signature 761 774 - -
Apr4g0058 1186 Gene3D Ribonuclease Inhibitor 370 451 IPR032675 -
Apr4g0058 1186 Pfam Protein kinase domain 916 1179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g0058 1186 SMART LRR_typ_2 688 712 IPR003591 -
Apr4g0058 1186 SMART LRR_typ_2 111 134 IPR003591 -
Apr4g0058 1186 SMART LRR_typ_2 135 159 IPR003591 -
Apr4g0058 1186 SMART LRR_typ_2 255 279 IPR003591 -
Apr4g0058 1186 SMART LRR_typ_2 761 785 IPR003591 -
Apr4g0058 1186 SMART LRR_typ_2 351 375 IPR003591 -
Apr4g0058 1186 SMART LRR_typ_2 231 254 IPR003591 -
Apr4g0058 1186 SMART LRR_typ_2 424 448 IPR003591 -
Apr4g0058 1186 SMART LRR_typ_2 472 496 IPR003591 -
Apr4g0058 1186 SMART LRR_typ_2 183 206 IPR003591 -
Apr4g0058 1186 SMART LRR_typ_2 639 663 IPR003591 -
Apr4g0058 1186 SMART LRR_sd22_2 135 161 - -
Apr4g0058 1186 SMART LRR_sd22_2 639 660 - -
Apr4g0058 1186 SMART LRR_sd22_2 231 260 - -
Apr4g0058 1186 SMART LRR_sd22_2 761 784 - -
Apr4g0058 1186 SMART LRR_sd22_2 688 714 - -
Apr4g0058 1186 SMART LRR_sd22_2 111 132 - -
Apr4g0058 1186 SMART LRR_sd22_2 424 456 - -
Apr4g0058 1186 SMART LRR_sd22_2 351 381 - -
Apr4g0058 1186 Gene3D Ribonuclease Inhibitor 522 833 IPR032675 -
Apr4g0058 1186 Gene3D Ribonuclease Inhibitor 452 521 IPR032675 -
Apr4g0058 1186 Pfam Leucine Rich repeat 112 125 IPR001611 GO:0005515
Apr4g0058 1186 Gene3D Transferase(Phosphotransferase) domain 1 994 1185 - -
Apr4g0058 1186 ProSiteProfiles Leucine-rich repeat profile. 763 786 IPR001611 GO:0005515
Apr4g0058 1186 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 8 169 - -
Apr4g0058 1186 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 161 252 - -
Apr4g0058 1186 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 256 1181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0058 Apr-Chr4 514771 518498 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0058 7 633 Receptor kinase-like Gene Family AT4G08850 34.644 3.69e-93 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Apr4g0058 Pkinase 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0058 - - ccaj:109803789 1866.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0058 4 514771 518498 Apr4g0058 4 514771 518498 ECH