Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0050 ATGGGGAGTAGGGTTAGGCGTGGGAAGAGATTGCAGAAGATGATGAAGTGCATGTGCACGGGTGAGCCGTTAAGAGGAGATGATGAAGCGGTTCCTTCGTTGGATTCTCTTGCAATTAAGGATTTTTATTCTTCAACAGCAAGTGGGAGTTTTGGCCAAGATGGACAAGTTGAGAGAGGACCGGATTCCGGGAACATCGGAGAAGCCGAATCGTCCTTACAAGAGAGTGGCATCTTGAACAATGAGGAAGCTAGTGCTTTGTTAGGAAGATATGAATATCAGGAAGGAAATATAGAAGCTGCTTTACGTGTTTATGAGAAAATAAATATAGGCGCTGTGACTCCCAAGATAAAAAATTCCCTTGCCAAAAGTAGAGAACGACGTAAGAAACATTCCCGTCGTAATGCTACTCCCCCAATGTCTATACATACAGCTGGATTACTGCTGGAGGCCTTTTTGCTAAAGGCAAAATGTTTGCAGATTCTGGGAAGGTTTAAAGAAGCTGCCCAAACTTGCAAGGTTATTCTAGACATAGTTGAATCTTCATTACCTGAAGGCTTCCCTCAAAACTTAGGCGATGAGTGTAAATTGCAGGAGATTTTGAATAAGGCAGTTGAGTTACTTCCAGAGTTATGGAAACTTGCTGATTCTCCACGTGAAGTTATCTTGTCTTACCGGCGTGCACTCCTTCACCAATGGAATCTAGATGCAGAAACTGTAGCAAAGATTCAGAAAGAATTTGTTGTTTTTCTTCTATATAGTGGAGGGGAAGCAATACCCTCAAATCTTCGTTCCCATATGGATACCTCATTTGTACCTAGAAACAACTTAGAAGAGGCTATACTTCTTTTAATGATCTTGCTAAGAAAAACGTCTGAAAATAAAATTCAGTGGGATCCTTCAATTTTGGACCACCTGTCATTTGCCTTATCTGTTTCAGGGGATTTGGCAGCTTTAGCCAATCAATTTGAAGAATTACTCCCTGGGACAATCAATCGAAGAGAGAGGTACCATGCCCTTGCTCTTTGTTATTATGGAGCAGGTGAGGACTTGGTAGCGCTGAATCTTCTTAGAAAATTGTTGAGTAGTTGTGAGGACCCAAAACATATTCCTGCTTTGTTAATGGCTTCTAAGATTTGTTGCGAGAACCCTGTTCTTGCAAAAGATGGGGCAAACTTTGCTCGCAGAGTGCTTGAGAACTTTAATGGAAGATGCGATCAGTTAGAAAGTCTTGCCAATTGCTTACTTAGTGTTTCACTTTCAGCACACTCAAAATTTGCTATTTCTAATTCTGAGATGCTTGAGGCACAATCTGAGGCACTTCATTCCCTGGAAACTGCAAACAAAGTGGCCAGAATGAGTGACCCTCTGGTACTTTACTATTTGGGTTTAGAATGTGCAGAACAAAGGAAGTTGGATGCTGCACTTCATTATGTAAAATGCTTTCTAGTGTTGGAAGCTGGGTCTAATGTTAAAGGGTGGTTATTGTTAGCCCGGATATTATCAGCTCAAAAACAGTTTTTGGATGCTGAATCTATTGTCAATGATGCTCTGGATCAGACTGGAATATGGGATCAAGGAGGGTTGTTGCGGACAAAAGCTAAACTGCAAATTGCACAGGGCCAGTTAAAGAGTGCCATTGAAACATATACTCAGCTTCTTGCTATTCTTCTAGTTCAGAGAAAAACTTTTGGTTCTCAGACGAAGCTATATAAGGACTACATAGATCATGCTAAGAACATGGAAGTGGAAATATGGCATGATCTTGCTTATGTATACATAAATCTGTCGCAGTGGCATGATGCTGAGGTGTGTCTTACAAAATCCAAGGCCATCAAACTATACTCTGCTTCTAGATGTCACGCAATAGGTACAATGTACGAAGCAAAGGGCCTTTACAAAGAGGCTTTAAAAGCTTTTCGTGATGCTTTGAACATTGAACCCGGAAATGTCCCTAGCTTGATCTCCACTGCGGTGGTTATTAGACGGTGCAGTAATCGATCAAATCCTGCTATCAGGAGCTTTCTGATGGATGCACTGCGGCTTGACAGATTTAATGCTTCTGCTTGGTATAATCTTGGCCTTTTTCACAAGGCTGAGGGCACAACCTTAGAAGCTGCAGAATGTTTTGAGACAGCTAACTTTCTTGAAGAATCAGCACCAATCGAACCTTTCAGATGA 2181 0.4149 MGSRVRRGKRLQKMMKCMCTGEPLRGDDEAVPSLDSLAIKDFYSSTASGSFGQDGQVERGPDSGNIGEAESSLQESGILNNEEASALLGRYEYQEGNIEAALRVYEKINIGAVTPKIKNSLAKSRERRKKHSRRNATPPMSIHTAGLLLEAFLLKAKCLQILGRFKEAAQTCKVILDIVESSLPEGFPQNLGDECKLQEILNKAVELLPELWKLADSPREVILSYRRALLHQWNLDAETVAKIQKEFVVFLLYSGGEAIPSNLRSHMDTSFVPRNNLEEAILLLMILLRKTSENKIQWDPSILDHLSFALSVSGDLAALANQFEELLPGTINRRERYHALALCYYGAGEDLVALNLLRKLLSSCEDPKHIPALLMASKICCENPVLAKDGANFARRVLENFNGRCDQLESLANCLLSVSLSAHSKFAISNSEMLEAQSEALHSLETANKVARMSDPLVLYYLGLECAEQRKLDAALHYVKCFLVLEAGSNVKGWLLLARILSAQKQFLDAESIVNDALDQTGIWDQGGLLRTKAKLQIAQGQLKSAIETYTQLLAILLVQRKTFGSQTKLYKDYIDHAKNMEVEIWHDLAYVYINLSQWHDAEVCLTKSKAIKLYSASRCHAIGTMYEAKGLYKEALKAFRDALNIEPGNVPSLISTAVVIRRCSNRSNPAIRSFLMDALRLDRFNASAWYNLGLFHKAEGTTLEAAECFETANFLEESAPIEPFR* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0050 726 Gene3D Tetratricopeptide repeat domain 559 720 IPR011990 GO:0005515
Apr4g0050 726 PANTHER PROTEIN NPG1 7 726 IPR043376 -
Apr4g0050 726 SUPERFAMILY TPR-like 454 555 IPR011990 GO:0005515
Apr4g0050 726 SUPERFAMILY TPR-like 149 366 IPR011990 GO:0005515
Apr4g0050 726 SMART tpr_5 617 650 IPR019734 GO:0005515
Apr4g0050 726 SMART tpr_5 491 524 IPR019734 GO:0005515
Apr4g0050 726 SMART tpr_5 149 182 IPR019734 GO:0005515
Apr4g0050 726 SMART tpr_5 687 720 IPR019734 GO:0005515
Apr4g0050 726 SMART tpr_5 583 616 IPR019734 GO:0005515
Apr4g0050 726 SMART tpr_5 527 560 IPR019734 GO:0005515
Apr4g0050 726 SMART tpr_5 456 489 IPR019734 GO:0005515
Apr4g0050 726 Gene3D Tetratricopeptide repeat domain 428 558 IPR011990 GO:0005515
Apr4g0050 726 Gene3D Tetratricopeptide repeat domain 59 417 IPR011990 GO:0005515
Apr4g0050 726 SUPERFAMILY TPR-like 64 213 IPR011990 GO:0005515
Apr4g0050 726 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 7 726 - -
Apr4g0050 726 SUPERFAMILY TPR-like 530 713 IPR011990 GO:0005515
Apr4g0050 726 MobiDBLite consensus disorder prediction 49 75 - -
Apr4g0050 726 Pfam Tetratricopeptide repeat 618 649 IPR019734 GO:0005515
Apr4g0050 726 ProSiteProfiles TPR repeat profile. 617 650 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0050 Apr-Chr4 459130 464872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0050 9 726 Calmodulin-binding Proteins AT4G28600 54.286 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0050 K21843 - gmx:100784353 1173.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0050 4 459130 464872 Apr4g0050 4 459130 464872 ECH
Apr4g0050 4 459130 464872 Apr8g0355 8 3004011 3010637 PCT