Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0042 ATGATGGATCATGTTATTGCTGGGAAGTTTAAACTGGGAAGGAAAATTGGGAGTGGTTCTTTTGGGGAGCTTTATATAGCTGTTAATATACAAACTGGGGAGGAGGTGGCTGTCAAGCTGGAACCTGTGAAGACCAAACATCCACAGCTTCACTATGAGTCAAAATTGTATATGCTTCTTCAAGGAGGAACGGGGATTCCCCATCTTAAGTGGTTTGGAGTTGAGGGAGACTACAATGTCATGGCAATTGACCTTCTTGGACCAAGTCTGGAAGATTTGTTCAATTATTGCAATCGGAAGTTAACACTGAAGACAGTGTTAATGCTTGCTGACCAATTAATTAACAGAGTTGAATATATGCATTCAAGAGGTTTCCTTCACCGTGACATTAAGCCGGACAATTTTTTAATGGGCTTAGGACGTAAAGCAAACCAGGTGTACATCATTGACTATGGCCTTGCTAAAAAATATAGGGATCTTCAAACTCATAGGCACATACCATACAGGGAAAACAAGAACCTTACAGGCACAGCTCGGTATGCAAGTGTCAACACTCATCTTGGAATCGAACAAAGCAGAAGGGATGATCTGGAATCTCTTGGTTATGTGCTCATGTACTTCTTAAGAGGAAGTCTTCCTTGGCAAGGACTGAAGGCTGGCACTAAAAAACAAAAATATGATAAAATCAGTGAAAAGAAGATGTCAACTCCTATAGAGGTACTCTGCAAATCATATCCCTCAGAGTTTGTATCATATTTCCACTACTGCCGATCATTGCGGTTTGAGGACAAGCCTGATTATTCATATTTGAAGAGGCTTTTTCGAGATTTATTTATTCGAGAAGGCTATCAATTTGACTATGTTTTTGACTGGACTATATTGAAGTATCCACAGATTGGTGGCAGCAGCTCTAGAGGGAGGCATGACAGTGGCAAGGCAGCGATGAATGCAGGACCATCTGTACAAAAGCCAGAAAAGATCTCAGTTGGGAAGGAGATTCGAGAGAAATTTTCTGGTGCTGTTGAAGCATTCTCTCGAAGGAACCCAACTTCTAGTCCTCGTGGTGATCACTCCAAACACAGGAGTTTTGAGGAAGTAGCAGTGCACAAAGATGTGTATCATGATCAAGAGAAGGGACGCAATTCCTCTCGATATGGTAGCAGTTCCAGAAGAGCCATAATCTCATCATCAACCAGACCAAGCTCCTCTGGGGATCACACTGAGAGTCGTACTGGCCGGCTAACTTCTACCGTTAGCCGTCCATCTACCACTCATAGAAATATTCAACCAATGTATGAGACCAAACAACCAACTTACACACGGTCCGGATCTAGCAGAGGCAACCGAGATGATCCTCTGCGGAGTTTTGAGCTCCTCTCTATCAGGAAGTAA 1392 0.4274 MMDHVIAGKFKLGRKIGSGSFGELYIAVNIQTGEEVAVKLEPVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMAIDLLGPSLEDLFNYCNRKLTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGGSSSRGRHDSGKAAMNAGPSVQKPEKISVGKEIREKFSGAVEAFSRRNPTSSPRGDHSKHRSFEEVAVHKDVYHDQEKGRNSSRYGSSSRRAIISSSTRPSSSGDHTESRTGRLTSTVSRPSTTHRNIQPMYETKQPTYTRSGSSRGNRDDPLRSFELLSIRK* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0042 463 PANTHER CASEIN KINASE-RELATED 2 451 - -
Apr4g0042 463 MobiDBLite consensus disorder prediction 327 341 - -
Apr4g0042 463 MobiDBLite consensus disorder prediction 352 381 - -
Apr4g0042 463 SMART serkin_6 10 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g0042 463 CDD STKc_CK1_delta_epsilon 9 283 - -
Apr4g0042 463 ProSiteProfiles Protein kinase domain profile. 10 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g0042 463 MobiDBLite consensus disorder prediction 382 446 - -
Apr4g0042 463 Gene3D Transferase(Phosphotransferase) domain 1 1 337 - -
Apr4g0042 463 PANTHER CASEIN KINASE I-LIKE PROTEIN 2 451 - -
Apr4g0042 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Apr4g0042 463 SUPERFAMILY Protein kinase-like (PK-like) 5 291 IPR011009 -
Apr4g0042 463 MobiDBLite consensus disorder prediction 447 463 - -
Apr4g0042 463 Pfam Protein kinase domain 11 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g0042 463 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Apr4g0042 463 MobiDBLite consensus disorder prediction 302 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0042 Apr-Chr4 407957 414820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0042 3 214 Miscellaneous Gene Families AT1G29230 27.397 5.47e-13 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Apr4g0042 Pkinase 2.8e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0042 K08960 - gmx:100781494 861.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0042 4 407957 414820 Apr4g0042 4 407957 414820 ECH
Apr4g0042 4 407957 414820 Apr8g0349 8 2955392 2963973 PCT