Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0041 ATGGATTCGGCAAGGAGTTGGTTACAGAAGTTTCAACCCCGTGACAGATTGAGGGGTTCTACGAGGAAGAAGGATGATACTGATGGTGGAAATGAAGGTTTAAATGAGCCAATGGATGAAACATCTCTCTCTAGTACCACAAAACAAAAGGTTGCAGCAGCCAAGCAATATATTGAGAACCACTACAAGGAGCAAATGAAGAACCTTCAGGAAAGGAAGGAACGTCGAACCATCTTGGAAAAGAAGTTAGCTGATGCTGATGTCTCTGAGGAAGATCAAAATAACCTACTTAAGTTTTTAGAGAAAAAGGAAACTGAATATATGCGTCTTCAAAGGCACAAAATGGGTGTTGATGATTTCGAGTTATTGACAATGATTGGAAAAGGTGCATTTGGGGAGGTCAGAGTTTGTAGAGAAAAGACTACAGATCATGTATATGCAATGAAAAAGCTAAAGAAATCAGAAATGCTTCGTAGAGGCCAGGTAGAACATGTTAGAGCTGAGAGGAATCTCCTTGCAGAGGTTGACAGCAATTGCATAGTTAAACTTTATTGTTCTTTCCAAGATGATGACTATTTGTATCTTATTATGGAGTATCTACCGGGTGGGGATATGATGACTCTTCTTATGAGAAAGGATATATTGACTGAAGATGAAGCCAGATTTTATGTAGGGGAAACAGTTTTGGCTATTGAATCTATACATAAACACAATTATATACATAGGGATATTAAACCTGATAACTTACTGCTTGATAGATATGGACACTTGAGGTTGTCAGATTTTGGACTATGTAAACCATTAGACTGTAGTACACTCGAAGAAACAGATCTTTCTATAGGTCAAAATGCAAATGGATCTGCACAAAATGATGAACGTGTAGCTCCAAAACGCACACAACAAGAACAGTTGGAACATTGGCAAAAGAATAGGAGGACACTTGCTTATTCTACTGTTGGTACACCAGACTATATTGCTCCAGAGGTTTTATTGAAGAAAGGTTACGGGATGGAATGTGATTGGTGGTCACTCGGAGCTATTATGTATGAAATGTTGGTGGGATATCCGCCTTTTTATTCAGATGATCCAATGTCAACTTGTAGGAAGATAGTAAATTGGAAATCCCACTTGAAATTTCCTGAAGAAGCAAGGCTATCTTCAGAGGCTATAGATCTAATTAGTAAGCTTTTGTGTAGTGTACACCAAAGGCTAGGGTCAAATGGTGCGGATGAAATAAAGGCTCATCCATTCTTCGAAGGTGTTGAATGGGACAAATTGTATCAAATTGAGGCTGCATTTATTCCGGAGGTTAATGATGAGCTAGATACCCAAAATTTTGAAAAATTTGAAGAGTCTGACACACAGATTCAATCATCTTCAAAAGCAGGTCCATGGAGAAAGATGCTTTCGTCCAAAGACATGAATTTTGTAGGATACACGTACAAAAACTTTGAAATTGTTAACGATTATCAAGTTCCTGGGATGGCTGAATTGAAGAAGAAAACATCCAAAGCAAAGAAGCCGTCCATCAAGTCCTTATTTGATTATGAGTCAGATACATCCGAAGTGTTAGAGAGCTCAGATACATCTGCAAGCATGACTAAGCAATATAATGATCAACCTGCCCAATCAATATAA 1638 0.3822 MDSARSWLQKFQPRDRLRGSTRKKDDTDGGNEGLNEPMDETSLSSTTKQKVAAAKQYIENHYKEQMKNLQERKERRTILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCREKTTDHVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDDYLYLIMEYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHLRLSDFGLCKPLDCSTLEETDLSIGQNANGSAQNDERVAPKRTQQEQLEHWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKSHLKFPEEARLSSEAIDLISKLLCSVHQRLGSNGADEIKAHPFFEGVEWDKLYQIEAAFIPEVNDELDTQNFEKFEESDTQIQSSSKAGPWRKMLSSKDMNFVGYTYKNFEIVNDYQVPGMAELKKKTSKAKKPSIKSLFDYESDTSEVLESSDTSASMTKQYNDQPAQSI* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0041 545 SUPERFAMILY Protein kinase-like (PK-like) 93 471 IPR011009 -
Apr4g0041 545 MobiDBLite consensus disorder prediction 1 52 - -
Apr4g0041 545 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Apr4g0041 545 MobiDBLite consensus disorder prediction 37 52 - -
Apr4g0041 545 Gene3D Phosphorylase Kinase; domain 1 118 447 - -
Apr4g0041 545 MobiDBLite consensus disorder prediction 9 31 - -
Apr4g0041 545 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 1 527 - -
Apr4g0041 545 ProSiteProfiles AGC-kinase C-terminal domain profile. 419 491 IPR000961 GO:0004674|GO:0005524|GO:0006468
Apr4g0041 545 Coils Coil 62 82 - -
Apr4g0041 545 MobiDBLite consensus disorder prediction 519 545 - -
Apr4g0041 545 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Apr4g0041 545 Pfam Protein kinase domain 121 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g0041 545 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 527 - -
Apr4g0041 545 ProSiteProfiles Protein kinase domain profile. 120 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g0041 545 Pfam Protein kinase C terminal domain 437 481 IPR017892 GO:0004674|GO:0005524|GO:0006468
Apr4g0041 545 Gene3D Transferase(Phosphotransferase) domain 1 204 436 - -
Apr4g0041 545 SMART serkin_6 120 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g0041 545 SMART pkinase_C_6 419 483 IPR000961 GO:0004674|GO:0005524|GO:0006468
Apr4g0041 545 CDD STKc_NDR_like 118 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0041 Apr-Chr4 396544 402845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0041 1 514 AGC Kinase Gene Family AT2G20470 79.541 0.0 857
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Apr4g0041 Pkinase 2.1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0041 K08790 - gmx:100783286 980.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0041 4 396544 402845 Apr4g0041 4 396544 402845 ECH
Apr4g0041 4 396544 402845 Apr8g1048 8 13541722 13553988 PCT
Apr8g0347 8 2938753 2947480 Apr4g0041 4 396544 402845 PCT