Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0037 ATGGGTCTCAGAGACATTGGTGCTTCACTGCCTCCTGGGTTTCGGTTTTATCCGAGTGATGAGGAATTGGTATGTCACTACCTTTACAAAAAGATCGCAAATGAGGAAGTTCTGAAGGGTACCTTGGTGGAAATTGACCTCCACATATGCGAACCATGGCAACTTCCTGAGGTGGCTAAGCTCAACGCAAATGAATGGTACTTCTTCAGCTTTCGGGACCGCAAATATGCGACAGGGTATAGAACCAACAGGGCCACTACATCAGGGTATTGGAAAGCAACGGGGAAGGATCGTATGGTGCTGGATCCAACCACGCAAGAGGTTGTAGGGATGAGGAAGACATTGGTGTTCTATAGGAACAGAGCTCCAAATGGCATCAAAACTGGATGGATCATGCATGAGTTCCGCTTGGAGACCCCACACATGCCGCCTAAGGAGGACTGGGTGTTGTGTAGAGTCTTCCACAAAAGCAAAGAAGAAAACAGTTCCAAACTAAGCACGCAACTTGTGTACGAGACAACACCTCCATCCCTAACTTTGGCTTCGTCATCTCCAACCAACCAATCCATCCCTGTTGGGTATAACAGATTTCCCTCTTTCTCTTCCTCCATGCCAACCCATCATCACTTCAACCCCACCCAAAACAATTCTTTGATGAATCTCCTTCACTTTTCTCGGGAAACAAACACCAACAATAGCACTGTTACTCATATTAGTACCAAAGGTGATGATGGGTATGGCTTCTTGTGGGACATGGATCTAGAAGAAAATAGCCTAGATGATGGCGTGGCTTCAAACTTGGACGCAATAAGATTCGACCTTGATAATAATAATAACAATATGGTCTTGTTGTAA 855 0.4538 MGLRDIGASLPPGFRFYPSDEELVCHYLYKKIANEEVLKGTLVEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGYRTNRATTSGYWKATGKDRMVLDPTTQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKEENSSKLSTQLVYETTPPSLTLASSSPTNQSIPVGYNRFPSFSSSMPTHHHFNPTQNNSLMNLLHFSRETNTNNSTVTHISTKGDDGYGFLWDMDLEENSLDDGVASNLDAIRFDLDNNNNNMVLL* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0037 284 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Apr4g0037 284 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Apr4g0037 284 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
Apr4g0037 284 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 277 - -
Apr4g0037 284 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Apr4g0037 284 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0037 Apr-Chr4 355484 365585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0037 6 159 NAC Transcription Factor Family AT1G56010 58.025 2.36e-64 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr4g0037 NAM 2.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0037 - - gmx:100782751 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0037 4 355484 365585 Apr4g0037 4 355484 365585 ECH
Apr4g0037 4 355484 365585 Apr8g0340 8 2874083 2878775 PCT