Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0036 ATGACGGAAGCAGATTGTGGAAATGATTGTGCCAAATATGTGAAGATGGAAAATATTTCAGTGCCCCCTGGTTTTGCATCCCTAACGTCTTTTAAATTGAAAAGGAGTGGAAAAGTTAAGGAAACCAATAAATCTACAAGCTTTCCAATTGCATCTGAACAAGAGCCGATCCACATGGATACTAAACCTGAGATGAATGACATTGCTGCCTATAAACAGGTTATTATGCACCGGCCATGGATAATCTCAGACCAGAGATACCACAAACCTGAGGAATCTCACATGGAGCGTCCTCCAATGGATCTCCCTTTAAATGCTTGTCGTCCAAAAGGGACCATACAGGGATGTCCAAACTGCAGTGAGAGTCTAAAGGTAACAGCAAGGTGGCATCCTGAGGATGCAAAAAGAGAAATTCTGGAAGAAGCTCCTATTTTCCACCCAACAGAGGAGGAATTCAAAGACACACTTAAATATATTGCAAGCATACGTTCCAAAGCAGAATCTTATGGAATTTGTCGTATTGTCCCACCTCCTTGCTGGAAGCCACCGTGTTTTCTTGAGGAAAAGGGCATATGGGAAAGCTCCAAATTTGTTGCTCAGATTCAGAGAATTGATGGACACCAAGTTCACTGTGCACAAGACATAATGGGAAGCTCCTGTGAAAGTACAAGAACCAATAGAAGTAGAGACATAAAAGTCACTTTGGACTCTCAGCTTGATAATAGAAACACTTCTCAGAATGTTGAACGCTGTGACTGTGAGTCTGAACCTGGCCTTAAATTCAGTCTCAAAACATTTAAGAAATATGCCGATGAATTCAAGACCCAGTACTTCAATTACAAGGATAAGAATAAGATTATGGGTTCTGATATAAATTTAGCTGTATGTCAACAGCAGTGGGAACCATCTGTGGAAAATATTGAGGGTGAATACAAACGAATTGCTCAAAATCCAACTGAAGAAATTGAGGTGCTTTGCAGTAACACTTTGGAGGCTGGAGTTTTTAGCAGTGGATTTCCTGCAGTTTCTGATCCTTTGGAGGCATACACTTACCCTGAATATTTGAAATCTGGATGGAATTTAAATAATATGCTTTCACTTCCAGGTTCCCTTCTTTCATTTGAAAGCTCTCAAGCTTCACATAACTTCTCCCCTCGGGTTCATGTGGGAATGTGCTTCTCTCCACTCAACTGGAAAGTTGAGGAGCACCACTTATACTCATTATCTTACATGCATTTGGGTGAACCAAAAGTGTGGTATAGCGTCCCAGCAAGGTTTTCTGTTAACTTTGAAACAATTTGGAAGAAGTATCTCCCAGATCTGTGTGCAGGACAGCCTGATATGCACAATAAACTGGTGATGCAATTATCTAGCTCCATATTGAAGGCAGCGGATATACCCGTATATCGTTGTGTTCAATGTCCTCGTGAATTTGTTCTCGTCTTCCCCGGAGCATATCATTCTGGATTTGATTGTGGTTTCAACTGTTCTGAAGCAGTAAGTTTTGCTCCTCTTGAGTGGCTGCTTCATGGACAGAATGTTGTAGAGCTATATTGTGAACAAAAGAGAAAGACAATTATTTCATACGATAAGCTTTTACTACAAGCAGCAAGGGAAGCTGTGAGGGCCAAGTGGGAAGCTGATCTGTGTATGAAGAGCACATCTGAAAATTTAACATCTAAAGATGTCTATCAAAGAAATGGGATCTTAACAAAAGCTTTGAAATCTCGCGTCCAAAGTGAAACTTTGAAGAGGAAATTTCTTTGCACTTCTTTAGTATCACAAAGAATGGATGAAAATTTTGATGCCACTTGTAAAAGGGAATGTAGTATTTGCCTTCGTGATTTGCACTTATCTGCTGTGGGTTGTTCATGTTCAGAAGACAAGTTCGCATGTCTTGATCATGTAAAACAGCTTTGTTCTTGCACTTGGAGCAACAAAACTCTCCTCTACCGTAATGAAATCAGTGATTTGGAAATTCTTTGTCGTGCTGTGGATGGAAAACTAAGCGCAGTCTATAGATGGGCCAAAGAGAATCTTGGATTAACTCTGAGCTCTGTTGCCTCCAAGAGATTAAAACAAAGCCCAGAAATTTTAAATGATTCAACTCACCCTTCTTGTAAACGACATAAATTGCGGGAAACCCCGAATTCATCAAAAAAGAAACAAAATGAAGTGGTTTCCCAAGTTGTAGGAACTTCCGGTGGCACTGATGGTACTTCTTATGGCATTCATTCAAAAAAGAAGACAGCTTCACTTCAGAAAATCATTTCAAATGACAAGAAAGGAATCAATTCCCTTGGCACCAAAAGTGATAAGAAGGCTCCTGAGGGTAAGTTTTCGATTTCAAAGAAAGTAGGAGACCCAAAAGAATTTGAGGTTTCTCCATTTACAAACTCACGTTACTTGTCTTTTTTACAAGAAAACAAGTTATTTGATGTTTCATATGATAGTTCGAGCATGTCTTCATCTTCAGAATCTGACAATGATAAATAG 2496 0.3966 MTEADCGNDCAKYVKMENISVPPGFASLTSFKLKRSGKVKETNKSTSFPIASEQEPIHMDTKPEMNDIAAYKQVIMHRPWIISDQRYHKPEESHMERPPMDLPLNACRPKGTIQGCPNCSESLKVTARWHPEDAKREILEEAPIFHPTEEEFKDTLKYIASIRSKAESYGICRIVPPPCWKPPCFLEEKGIWESSKFVAQIQRIDGHQVHCAQDIMGSSCESTRTNRSRDIKVTLDSQLDNRNTSQNVERCDCESEPGLKFSLKTFKKYADEFKTQYFNYKDKNKIMGSDINLAVCQQQWEPSVENIEGEYKRIAQNPTEEIEVLCSNTLEAGVFSSGFPAVSDPLEAYTYPEYLKSGWNLNNMLSLPGSLLSFESSQASHNFSPRVHVGMCFSPLNWKVEEHHLYSLSYMHLGEPKVWYSVPARFSVNFETIWKKYLPDLCAGQPDMHNKLVMQLSSSILKAADIPVYRCVQCPREFVLVFPGAYHSGFDCGFNCSEAVSFAPLEWLLHGQNVVELYCEQKRKTIISYDKLLLQAAREAVRAKWEADLCMKSTSENLTSKDVYQRNGILTKALKSRVQSETLKRKFLCTSLVSQRMDENFDATCKRECSICLRDLHLSAVGCSCSEDKFACLDHVKQLCSCTWSNKTLLYRNEISDLEILCRAVDGKLSAVYRWAKENLGLTLSSVASKRLKQSPEILNDSTHPSCKRHKLRETPNSSKKKQNEVVSQVVGTSGGTDGTSYGIHSKKKTASLQKIISNDKKGINSLGTKSDKKAPEGKFSISKKVGDPKEFEVSPFTNSRYLSFLQENKLFDVSYDSSSMSSSSESDNDK* 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0036 831 Pfam C5HC2 zinc finger 609 659 IPR004198 -
Apr4g0036 831 ProSiteProfiles JmjC domain profile. 356 519 IPR003347 -
Apr4g0036 831 Gene3D Cupin 127 503 - -
Apr4g0036 831 SMART JmjN_1 141 182 IPR003349 -
Apr4g0036 831 MobiDBLite consensus disorder prediction 721 745 - -
Apr4g0036 831 MobiDBLite consensus disorder prediction 698 745 - -
Apr4g0036 831 MobiDBLite consensus disorder prediction 766 786 - -
Apr4g0036 831 MobiDBLite consensus disorder prediction 703 720 - -
Apr4g0036 831 Pfam jmjN domain 143 176 IPR003349 -
Apr4g0036 831 PANTHER INACTIVE LYSINE-SPECIFIC DEMETHYLASE JMJ19-RELATED 92 761 - -
Apr4g0036 831 SUPERFAMILY Clavaminate synthase-like 257 545 - -
Apr4g0036 831 MobiDBLite consensus disorder prediction 762 786 - -
Apr4g0036 831 SMART cupin_9 353 519 IPR003347 -
Apr4g0036 831 Pfam JmjC domain, hydroxylase 387 502 IPR003347 -
Apr4g0036 831 ProSiteProfiles JmjN domain profile. 142 183 IPR003349 -
Apr4g0036 831 PANTHER LYSINE-SPECIFIC DEMETHYLASE 92 761 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0036 Apr-Chr4 339025 345226 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0036 20 689 JUMONJI Transcription Factor Family AT1G08620 47.668 0.0 596
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Apr4g0036 JmjC 1.1e-30 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0036 - - gmx:100804864 1213.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0036 4 339025 345226 Apr4g0036 4 339025 345226 ECH