Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0033 ATGCATATAGGTCAAACAGATACAACTTCAGTGAAATGTCTTATTAACAGCATTTCTCGATTCATTCTTCTAGTTTCTTGCCAAACAGTGAAACCTATGATCCTTCAGAAGAACTGTGATAATATGGTTGGCGTGTTGAAGCATTTGAAACCAGTGCTCGATGATGTTGTGGATTACAAAATCCCTTTGGATGAAAATCTGTGTAGAGAATGTGAAAAATTGGATATGCAGGTTGATGAAGCTAGGGAGTTTGTTGAAAAATGGACCCCAAAGATGAGCAAGATTCATTGTGTTCTTCAAAGTGGGGAATTGTTGATCAAGTTACAGAGCGCTTCACATAAGATTTTTCATTTGATAGTTGGATCCTTAAATTCACCTGCATCTGTTTCAGTTTTGGCTAATATTCAGCAATATATGCAGGAACTTCAGTGTTTGAAGAAGGAACCAGCAATGATCTTTATAGAAGAAGCACTGAGAAATCAAAGGGATAATATTGAACCTTGCTATAATCATCTAAAGGAAATTATAGAGTTACTCAAATTTACATCAAACCAGGAACTCCTGAAAGAAATTATTGCTGTGGAAATGGAAAGGATGAATGCTGAAGCCAATACAACAAAAGGGGACATGGATAAAAGTTACCAAATTGTGAATCTTGTGTGCAATTTACGTGATTATGTGATGAAAATTGAGCGCCCTGAAGTCAAAAGTGGTGTCTCAATCCCACCATACTTTCGGTGTCCTTTATCATTGGAACTCATGTCAGATCCTGTTATTGTGGCTTCAGGTCAGACATATGAGAGGCAGTCCATTCAAAAATGGCTTGATCATGGGCTAACTGTTTGTCCCAAGACTCATCAGAGACTAGTACATACAAATCTCACTACCAATTATACTGTTAAAGCTATGATTGCAAATTGGTGTGAGGAAAATAATGTCAAACTTACAACTGGCTCTAAGCACAATGATTCTGCTCATATTTCATCCCCCACAGATCATTTATTGCATCAAGATTTTGATCGTGCATGTAGCTTTGAGTCTTTAGATAGTAGCAATTCCAATTCGAATCAAGCTGGAAGTGCATTTGGGAAGCAAAAGGATGATAGCTCTTTCAAATCAAGCAGGGAATCCAATAGATGTCAGAATGAAGTGACAGACAACTTTGAGCAACAATCTCCTGCACCTTCATGTAGTAACAGCAGAAGTGAATCATTTTCAAGTTCTATTTCTAGTACTGATTATGTACTTCCATTTCCTGTTTCAAAAGCGGTGTCAAATAAGCATCAAAATGTGGAGTTGTCTGGAGAAATTACTAATGGGTGTCCTCCTTCTACTGCATATAAAGAATTGGGGATTCTTCCTTGGTTATCTGGAAAGCCATTTCATAGCCCTGGATCAAAAATTGGAATGATGGGCAATCAAAATAAGTATAATGTAAATAATAATAATAATATTACTAGTCATTCAAAAGCTGATTCCCATCATGTTTCCAACTTAGGATCTGATGATTTGATCACCACATCTCATGTCAATGAATTGATTGAAGATCTCCAAAGCCAATCATATGAAGCACAAACTGCTGCTGCAGAAGAATTGAGGCTCTGTACCAAGCATAACATGGAGAACCGTATCATTGTAGGCCGGTGTGGGGCTATTATGCCTTTACTTTCACTGCTATATTCAGACATGAAGATAACACAAGAGCATGCTGTGACAGCTCTATTGAATTTGTCAATTAATGAAGAGAACAAGGTCTTAATTATGGAAGCAGGAGCTATAGAGCCACTTATCCATGTTTTACAAACAGGAAATGATGGTGCCAAGGAGAATTCTGCTGCAGCTCTGTTCAGCCTCTCTGTAATAGATAACAATAAGGCAAAAATTGGCCGTTCTGGTGCAGTAAAAGCATTAGTGAATCTTCTAGCCTCTGGAACTCTCAGGGGAAAGAAGGATGCTGCTACTGCTTTATTTAACCTGTCAATATTCCATGAGAATAAAGCTCGTATAGTTCAAGCTGGTGCTGTGAAGTTTCTGGTTCTGTTATTAGACCCTTCTGATGGAATGGTTGACAAGGCAGTTGCTCTTTTGGCAAACCTGTCAACAATTGCAGAGGGTCGGTTAGAAATCGCAAGGGAAGGTGGCATTCCCTTACTAGTTGAAATTGTTGAATCAGGTTCTCAGAGGGGAAAGGAAAACGCTGCTTCTGTTCTCTTGCAACTGTGTCTTCATAGTCGCAAGTTTTGTACCCTGGTTCTCCAAGAAGGAGCTGTACCACCCCTGGTTGCATTATCTCAGTCTGGTACTCCAAGAGCAAGGGAAAAGGCACAACAGCTTCTCAGTCATTTTCGTAATCAGCGTGAAGGCGGCACGGGGATGGGAAAATCATGA 2388 0.392 MHIGQTDTTSVKCLINSISRFILLVSCQTVKPMILQKNCDNMVGVLKHLKPVLDDVVDYKIPLDENLCRECEKLDMQVDEAREFVEKWTPKMSKIHCVLQSGELLIKLQSASHKIFHLIVGSLNSPASVSVLANIQQYMQELQCLKKEPAMIFIEEALRNQRDNIEPCYNHLKEIIELLKFTSNQELLKEIIAVEMERMNAEANTTKGDMDKSYQIVNLVCNLRDYVMKIERPEVKSGVSIPPYFRCPLSLELMSDPVIVASGQTYERQSIQKWLDHGLTVCPKTHQRLVHTNLTTNYTVKAMIANWCEENNVKLTTGSKHNDSAHISSPTDHLLHQDFDRACSFESLDSSNSNSNQAGSAFGKQKDDSSFKSSRESNRCQNEVTDNFEQQSPAPSCSNSRSESFSSSISSTDYVLPFPVSKAVSNKHQNVELSGEITNGCPPSTAYKELGILPWLSGKPFHSPGSKIGMMGNQNKYNVNNNNNITSHSKADSHHVSNLGSDDLITTSHVNELIEDLQSQSYEAQTAAAEELRLCTKHNMENRIIVGRCGAIMPLLSLLYSDMKITQEHAVTALLNLSINEENKVLIMEAGAIEPLIHVLQTGNDGAKENSAAALFSLSVIDNNKAKIGRSGAVKALVNLLASGTLRGKKDAATALFNLSIFHENKARIVQAGAVKFLVLLLDPSDGMVDKAVALLANLSTIAEGRLEIAREGGIPLLVEIVESGSQRGKENAASVLLQLCLHSRKFCTLVLQEGAVPPLVALSQSGTPRAREKAQQLLSHFRNQREGGTGMGKS* 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0033 795 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 316 IPR013083 -
Apr4g0033 795 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 550 592 IPR000225 GO:0005515
Apr4g0033 795 Pfam Armadillo/beta-catenin-like repeat 580 619 IPR000225 GO:0005515
Apr4g0033 795 Pfam Armadillo/beta-catenin-like repeat 623 660 IPR000225 GO:0005515
Apr4g0033 795 Pfam Armadillo/beta-catenin-like repeat 541 578 IPR000225 GO:0005515
Apr4g0033 795 SUPERFAMILY ARM repeat 503 782 IPR016024 -
Apr4g0033 795 Gene3D - 510 625 IPR011989 -
Apr4g0033 795 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 591 633 IPR000225 GO:0005515
Apr4g0033 795 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 11 790 - -
Apr4g0033 795 MobiDBLite consensus disorder prediction 350 403 - -
Apr4g0033 795 Pfam U-box domain 241 312 IPR003613 GO:0004842|GO:0016567
Apr4g0033 795 PANTHER U BOX DOMAIN-CONTAINING 11 790 - -
Apr4g0033 795 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
Apr4g0033 795 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Apr4g0033 795 SMART arm_5 702 742 IPR000225 GO:0005515
Apr4g0033 795 SMART arm_5 539 579 IPR000225 GO:0005515
Apr4g0033 795 SMART arm_5 621 661 IPR000225 GO:0005515
Apr4g0033 795 SMART arm_5 580 620 IPR000225 GO:0005515
Apr4g0033 795 SMART arm_5 662 701 IPR000225 GO:0005515
Apr4g0033 795 Coils Coil 184 204 - -
Apr4g0033 795 Gene3D - 703 783 IPR011989 -
Apr4g0033 795 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 673 714 IPR000225 GO:0005515
Apr4g0033 795 MobiDBLite consensus disorder prediction 350 367 - -
Apr4g0033 795 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 632 674 IPR000225 GO:0005515
Apr4g0033 795 SUPERFAMILY RING/U-box 239 314 - -
Apr4g0033 795 MobiDBLite consensus disorder prediction 375 403 - -
Apr4g0033 795 CDD RING-Ubox_PUB 245 287 IPR045210 -
Apr4g0033 795 Gene3D - 626 702 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0033 Apr-Chr4 301844 306631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0033 215 793 U-box Gene Family AT2G23140 45.833 1.25e-162 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0033 - - gmx:100804684 1240.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0033 4 301844 306631 Apr4g0033 4 301844 306631 ECH