Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0026 ATGGGGAGAGCTCCATGCTGCGCAAAGATGGGCCTCAAGAGAGGGCCATGGACTCCAGAAGAAGATCAAATTCTCATCAATTACATCAACACTTATGGCCATTCCAATTGGCGTGCTCTGCCCAAACATGCTGGCCTGTTAAGGTGCGGAAAGAGTTGCAGGCTCCGGTGGACAAATTATCTGAGGCCTGACATCAAACGCGGCAACATTACCAAAGAAGAAGAGGATGCAATAATCAATTTACATGAAATGTTAGGAAACAGATGGTCGGCTATTGCCGCAAGGCTACCAGGGCGCACAGATAATGAGATAAAAAACGTGTGGCACACCCATTTGAAGAAGAGGCTGCCACCAAACCAAGAGAGTCACCACCCAAAACGAAATAAAAAACAACAAACGTTGGATACTGTGGACGCCAAACAGCAACAACGACACCCCTCAAAGACACCCAAAGAAGAGAACACAAAGGACACCCCATTATCTCCTCCACAATGTTCTAGTGACAACAATAGTACCATAACTAATACTACTACTAATCATGGCATGTCCGTTAATATTAATATTAATGATGCTGACTCACCACAAAATAATCTTGCATTGGATGAGGATTTTTGGTCTGAAGTATTGTCTTCCGATAATTCCGGTGAGACAAGCGATTTTCCGACAATCGGTGCTGACTGTGATCAGATACAACTTCCCTTCTCTCCTCTGTCAAGCATGTGTGATGATGACATGAACTTTTGGTACGATGTTTACGCGAGAGCTGAGGAATTAAATGAGATTTTGGAATTGTGA 795 0.4377 MGRAPCCAKMGLKRGPWTPEEDQILINYINTYGHSNWRALPKHAGLLRCGKSCRLRWTNYLRPDIKRGNITKEEEDAIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLPPNQESHHPKRNKKQQTLDTVDAKQQQRHPSKTPKEENTKDTPLSPPQCSSDNNSTITNTTTNHGMSVNININDADSPQNNLALDEDFWSEVLSSDNSGETSDFPTIGADCDQIQLPFSPLSSMCDDDMNFWYDVYARAEELNEILEL* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0026 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr4g0026 264 MobiDBLite consensus disorder prediction 141 155 - -
Apr4g0026 264 CDD SANT 16 61 IPR001005 -
Apr4g0026 264 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Apr4g0026 264 Gene3D - 11 67 - -
Apr4g0026 264 MobiDBLite consensus disorder prediction 115 178 - -
Apr4g0026 264 Gene3D - 71 158 - -
Apr4g0026 264 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr4g0026 264 PANTHER TRANSCRIPTION FACTOR MYB15 1 259 - -
Apr4g0026 264 MobiDBLite consensus disorder prediction 115 134 - -
Apr4g0026 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Apr4g0026 264 MobiDBLite consensus disorder prediction 156 178 - -
Apr4g0026 264 CDD SANT 71 112 IPR001005 -
Apr4g0026 264 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr4g0026 264 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Apr4g0026 264 SMART sant 13 63 IPR001005 -
Apr4g0026 264 SMART sant 66 114 IPR001005 -
Apr4g0026 264 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr4g0026 264 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0026 Apr-Chr4 259603 261324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0026 1 264 MYB Transcription Factor Family AT2G31180 51.429 4.60e-85 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr4g0026 Myb_DNA-binding 9.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0026 K09422 - gmx:100802214 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0026 4 259603 261324 Apr4g0026 4 259603 261324 ECH
Apr4g0026 4 259603 261324 Apr8g1060 8 13760528 13762670 PCT
Apr8g1550 8 25161125 25162324 Apr4g0026 4 259603 261324 PCT