Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0020 ATGGATTTTGATTCTCCTCTCTTCCTAAATCACAACCTTAACTTGTTCACTGAAAATTCCTCCGTTTCTGGAGACCCTTTTTCCTGGGATTACGATTTCGTTTTCTTCAACGATGACAACAATACCCTTCCACTGAACTTCAGTGAGAACCACTCACAGTCTCAACAGACCAAGGAATCATCCTCCGCATCAAACTCTTCTCTGGGTAGCGTTGAGTCACAAGAAGTCTCTTCTAACACAAACTACGCACACATGAGCGAAACACGTGTGCCATCCGCTTCAGAGTCACAAGCACCAAAGGAGAGCAGGGTGTACAGGGGAGTGAGGAAGAGACCGTGGGGGAAATTCGCGGCAGAGATAAGAGATTCCACGAGAAACGGGGTTCGAGTGTGGATTGGAACGTTTGACACAGCTGAAGATGCAGCTTTGGCATATGACCAAGCAGCGTTCTCCACAAGGGGTTCTCTTGCTGTGCTGAATTTTCCAGAGGAAGTGGTGAAGGCGTCACTGAGAGAGATGCAGAGTAAGCCTTGGGAAGAGGGTTCTTCCCCTGTTTTGGCACTCAAGAGGAAACACACCATGAGAAGAAAGTCCACGAAGCCCAGTAAGAAGAAAACGAAAAGGGATGAATTGGAATTGAGCAGTTCAGAAAATGTGCTGGTGTTGGAGGATTTGGGTGCTGAATATCTAGAACAACTTTTGAGTTTGACTTCGTAG 717 0.4672 MDFDSPLFLNHNLNLFTENSSVSGDPFSWDYDFVFFNDDNNTLPLNFSENHSQSQQTKESSSASNSSLGSVESQEVSSNTNYAHMSETRVPSASESQAPKESRVYRGVRKRPWGKFAAEIRDSTRNGVRVWIGTFDTAEDAALAYDQAAFSTRGSLAVLNFPEEVVKASLREMQSKPWEEGSSPVLALKRKHTMRRKSTKPSKKKTKRDELELSSSENVLVLEDLGAEYLEQLLSLTS* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0020 238 MobiDBLite consensus disorder prediction 46 99 - -
Apr4g0020 238 Pfam AP2 domain 104 154 IPR001471 GO:0003700|GO:0006355
Apr4g0020 238 MobiDBLite consensus disorder prediction 46 106 - -
Apr4g0020 238 MobiDBLite consensus disorder prediction 191 213 - -
Apr4g0020 238 ProSiteProfiles AP2/ERF domain profile. 104 162 IPR001471 GO:0003700|GO:0006355
Apr4g0020 238 PANTHER DNA-BINDING DOMAIN 6 235 IPR044808 GO:0003700|GO:0009873
Apr4g0020 238 Gene3D AP2/ERF domain 104 164 IPR036955 GO:0003700|GO:0006355
Apr4g0020 238 SMART rav1_2 104 168 IPR001471 GO:0003700|GO:0006355
Apr4g0020 238 SUPERFAMILY DNA-binding domain 104 163 IPR016177 GO:0003677
Apr4g0020 238 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 235 - -
Apr4g0020 238 PRINTS Ethylene responsive element binding protein signature 105 116 IPR001471 GO:0003700|GO:0006355
Apr4g0020 238 PRINTS Ethylene responsive element binding protein signature 128 144 IPR001471 GO:0003700|GO:0006355
Apr4g0020 238 CDD AP2 105 163 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0020 Apr-Chr4 226805 227521 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0020 75 234 AP2-EREBP Transcription Factor Family AT3G23240 56.790 6.16e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr4g0020 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0020 K14516 - gmx:100801682 276.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0020 4 226805 227521 Apr4g0020 4 226805 227521 ECH
Apr4g0020 4 226805 227521 Apr8g0329 8 2754201 2754914 PCT