Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0019 ATGAAGTTAATGTTGTCATTGTTATTATTTCACACTTCACAGCCATACCAATCAGATATCTTCAAAGCAATTAACATGAATTCTCCTCTCTTTCAACACTCAGACTGGCCATGGGGCACGTTGAAGGAGCCATCAGAAACTTTGTCTGAATCATTTTCAAGCAAAGGTAATGATTATGACCCAATTCATGACTCTCTCTCCTTTGATATGATTGACTACTCAAGGGATCCACAGCCACCAAGTGATGTTATTGAAAGGCAACCAAAGCTATTGCTGTTGAATTCTGAAGCTAAAGAAGTGAAGACTAATAAGAAGTCTTACGTAGGGGTGAGAAGAAGACCATGGGGAAAATTTGCAGCAGAAATCAGAGACACAACTAGGAAAGGAAGAAGGGTTTGGCTTGGAACCTTTGATAGTGCTGAGGAAGCTGCTTTGGCTTATGATCAGGCTGCATTTTCCATGAGAGGTTCAAGTGCTGTCATGAATTTTTCGGTCAAAAGGGTTCAAGAATCGTTGCAAGAGATTAACTATGTTGGTTCCAGACAAGGGTGCTCTCCAGCATTAGAGCTCAAACAAAAGCACTTTATTCGAAGAAAATTGTCATCAAAGGCTAAGAAAAGTAAAGGGCAACAGGAGTTGGAGGAATCGAGTGTTGTGGTGCTGGAGGACTTGGGAGCTGAATATCTTGAGGCACTTTTAAGCACATCAGATCAAAGTGCAAGCTCTAGCTGCTTACAATAA 741 0.4103 MKLMLSLLLFHTSQPYQSDIFKAINMNSPLFQHSDWPWGTLKEPSETLSESFSSKGNDYDPIHDSLSFDMIDYSRDPQPPSDVIERQPKLLLLNSEAKEVKTNKKSYVGVRRRPWGKFAAEIRDTTRKGRRVWLGTFDSAEEAALAYDQAAFSMRGSSAVMNFSVKRVQESLQEINYVGSRQGCSPALELKQKHFIRRKLSSKAKKSKGQQELEESSVVVLEDLGAEYLEALLSTSDQSASSSCLQ* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0019 246 Gene3D AP2/ERF domain 105 166 IPR036955 GO:0003700|GO:0006355
Apr4g0019 246 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Apr4g0019 246 PRINTS Ethylene responsive element binding protein signature 130 146 IPR001471 GO:0003700|GO:0006355
Apr4g0019 246 PANTHER DNA-BINDING DOMAIN 99 235 IPR044808 GO:0003700|GO:0009873
Apr4g0019 246 Pfam AP2 domain 106 156 IPR001471 GO:0003700|GO:0006355
Apr4g0019 246 SUPERFAMILY DNA-binding domain 106 165 IPR016177 GO:0003677
Apr4g0019 246 SMART rav1_2 106 170 IPR001471 GO:0003700|GO:0006355
Apr4g0019 246 ProSiteProfiles AP2/ERF domain profile. 106 164 IPR001471 GO:0003700|GO:0006355
Apr4g0019 246 CDD AP2 105 163 IPR001471 GO:0003700|GO:0006355
Apr4g0019 246 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 99 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0019 Apr-Chr4 207441 208181 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0019 83 241 AP2-EREBP Transcription Factor Family AT3G23240 54.167 8.59e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Apr4g0019 AP2 2.5e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0019 K14516 - gmx:100800600 265.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0019 4 207441 208181 Apr4g0019 4 207441 208181 ECH
Apr4g0019 4 207441 208181 Apr8g0327 8 2722490 2723189 PCT