Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0018 ATGGATTTTGATTCTTCAAAATGCTCGTACCAAAGTGTAGAATCCTTTTCTAGTGCATGGGAAGAGTTGTTTTTGTTCAATAACCTAACCTTCAATTCAGTGAAGGAAACGTCCTCGGACTTAAAATCTTCATCCTCCAGTGGAGGAAACCTATCACTTCAACCAAATGGCTCAAATTCAAAAGGCCTATCAAAATCACCAGCATGCAAACGAGAGAAGAGACCCTACAGGGGAGTAAGAAGAAGGCCATGGGGAAAATTCGCAGCAGAAATAAGGGACCCGACTAGAAATGGGGTTAGAGTGTGGATTGGAACATTTGACACAGCTGAAGCAGCTGCTTTAGCTTATGACCAAGCTGCTTTCTTGACACGTGGCTTTCTAGCTACCCTTAACTTTTCAGAACAAGTAGTGAGGGAGTCCCTCAAAGACATGGGCTTCAAGACATTGAAAAAAGATTGCTCACCCGTGTTGGAACTCAAAAGGATGCACTTGATGAGAGCAAAATCTAGGGCCATAAGGAGTAGTAATGATAAGAAGGTTAAAAGGACTTGCATAAGTGGCCAACTAGACATTACTCAAAATGTGTTGGTGTTGGAGGATTTGGGTCCTGAATATCTAGACCAACTTCTGAGCTCCACTTCCCTTGAGAATGTCGGTTCTTGGTACTGA 669 0.4275 MDFDSSKCSYQSVESFSSAWEELFLFNNLTFNSVKETSSDLKSSSSSGGNLSLQPNGSNSKGLSKSPACKREKRPYRGVRRRPWGKFAAEIRDPTRNGVRVWIGTFDTAEAAALAYDQAAFLTRGFLATLNFSEQVVRESLKDMGFKTLKKDCSPVLELKRMHLMRAKSRAIRSSNDKKVKRTCISGQLDITQNVLVLEDLGPEYLDQLLSSTSLENVGSWY* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0018 222 SMART rav1_2 75 139 IPR001471 GO:0003700|GO:0006355
Apr4g0018 222 Gene3D AP2/ERF domain 75 135 IPR036955 GO:0003700|GO:0006355
Apr4g0018 222 CDD AP2 76 135 IPR001471 GO:0003700|GO:0006355
Apr4g0018 222 PANTHER DNA-BINDING DOMAIN 32 214 IPR044808 GO:0003700|GO:0009873
Apr4g0018 222 MobiDBLite consensus disorder prediction 42 65 - -
Apr4g0018 222 Pfam AP2 domain 76 121 IPR001471 GO:0003700|GO:0006355
Apr4g0018 222 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Apr4g0018 222 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
Apr4g0018 222 ProSiteProfiles AP2/ERF domain profile. 75 133 IPR001471 GO:0003700|GO:0006355
Apr4g0018 222 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 32 214 - -
Apr4g0018 222 MobiDBLite consensus disorder prediction 42 77 - -
Apr4g0018 222 SUPERFAMILY DNA-binding domain 76 134 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0018 Apr-Chr4 200631 201299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0018 65 221 AP2-EREBP Transcription Factor Family AT3G23240 53.503 3.73e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr4g0018 AP2 3.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0018 K14516 - gmx:100818907 245.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0018 4 200631 201299 Apr4g0018 4 200631 201299 ECH
Apr4g0018 4 200631 201299 Apr8g1065 8 13913573 13914220 PCT
Apr8g0326 8 2700535 2702067 Apr4g0018 4 200631 201299 PCT