Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0017 ATGATGGGTACTAATACCAACTTGCACCAAGTACTCAGAAGCCTCTGTTTCAATACTCACTGGAACTACGCCATCTTTTGGAAGCTCAAACATCGTGCTCGAATGATCTTGACATGGGAGGATGCTTACTATAACAATCCTGATGATTGCGACTCTTCAGAAAATAAGTCCTGCCATAAGACATTGGAACAGATTGGTTGTGGGAAATTTTCGCACAGTGCATTAGGGTTAGCCGTGGCTAAGATGTCATATCATGCATATTCATTAGGTGAAGGTATTGTTGGACAGGTTGCTGTTACTGGAAAGCATAGATGGATCTGTGCCGATAATCAGGTTACAGATTCTGGCTTGTCTTTCGAGTTTGCTGATGGGTGGCAGTCTCAGTTTTCTGCCGGAATCAGGACGATTGTTGTTGTTGCTGTAATCCCACTTGGCGTTGTTCAGCTTGGATCTCTAAATAAAGTGATTGAAGATATGGAGGTTGTAACTCATATCAGAAATCTTTTTTTGTCTGCTCAAGCTTACTCAATAAGCCATGTTCCTAGTCAAATTCCGAGTAGTTTGAAGAGTTCTTCATCTCAGCCAGATGAATTGAAGGAAAATTTGCCTTCAGATATTATGCCTGGTTGCTTACATGCTACAGAGAAAACCTTGAAGAATGAAACAGTGGAAGTTTCGGTGCCCCTTCAATGTTCTGGGAAGGACTATGCACCTCACTCTGCCTATGAGAAAATGACTGATACTTTGACCAAGCATGAGGGGCCTGAATTTTATAGTGATGAAAGTTCCATTTTGCTTCAGTCTATATCCAATATGATGAATGTGGAACATCAAGAATTTGAAGAGAGGAGACCTCTAAATGGGATGAAGTGTGAAGGGGGTAGTAGTGGTTGCAAAGATATGAGGTTGGAATCGGAAAAAAATATCTCATCATTTTTAAACAATTCTGTAACGAATAATGCTAGCACCAATGATTTAATATGTCCAGAAAAAATCACAGTTGATTCTGCATGCTTTCCTTCAGTTTTTCTTGATGCAGTTGTTTTTGAAAGTGGTAAGTTGCATCATGTGGATATTAGCCAAAAAGAGGTGTTGAATTTTGCCACCCAACCTTCTGATGCAAACACCCAAAAGCATACTGAAAAGTCAAAGTTTCAGATAGAACCTTGTTACATGGATACATCGTACACATTGAAGTTCCCTGCTGGCTGTGAGTTACATGAAGCACTTGGACCAGCTTTTCTGAAAGGGAGTAAAGGTTTTGATTGGCCAGTGCTGGTTAATCAAGATATGAAAACTGTTGAAATGCAAGACAATCTTAGCACTAGCCAATTGACTACTGAATCTCATCCAGAACATCTCTTGGAAGCAATGGTGGCCAACATTTGCCATAGTAATGATGTTAATAGTGAATTATCATTTTGTACATCAATACAATCTGCAATGGTCTCTGGAAAGAATCATGAAGCTTCTATCCACAATGTGCATACTATTAATTCAGAATGCTATTCAATAGATCAGCCTTCTCTTGTTAAAGAGGACAAGCACCCATGTTTGAGTTCATCATCGGGTATATGTGGTGTGATGTCTTCAAAAGGTGTTTCATCTTCATTTCCTAATTCAAATAGTGGACAATTTGAAAGATCTTCTGAACCATCTAAAAACAGCAAGAAGAGGGCTAGGCCTGGGGAAAGTTGTAGGCCTCGACCAAGAGACAGGCAACTGATCCAAGATCGAATTAAGGAGTTGAGAGAGCTGGTGCCAAATGGAGCAAAGTGCAGTATTGATTCACTACTGGAACGCGCAATAAAGCACATGCTCTTTCTCCAAAGCATAACTAAGCATGCTGACAAGCTAACTAAATTTGCTGATACTAAGTCAAAGTTGCATCACATGGAAACAGACATTCGTGGATCCTCTAGTTATGAGCAGGGCTCAAGCTGGGCAATGGAGGTAGGGGGTCATCTGAAAGTACATTCAATATTAGTGGAGAATCTGGGCAAGAATGGACAAATGCTTGTTGAGATGCTCTGTGAAGAGTGCAGCCATTTTCTTGAAATAGCAGAAGCCATAAGAAGCCTGGGCCTTACCATTTTGAAGGGTGCAACAAAAGCTCATGGTGAGAAGATATGGATATGCTTTGTTGTTGAGGGTCAAAACAACAGAAATAATGTACACAGATTGGATATCTTGTGGCCGCTTGTTCAAATACTGCAATCCAAGAGCACAGTGAATTCACAATAA 2244 0.4033 MMGTNTNLHQVLRSLCFNTHWNYAIFWKLKHRARMILTWEDAYYNNPDDCDSSENKSCHKTLEQIGCGKFSHSALGLAVAKMSYHAYSLGEGIVGQVAVTGKHRWICADNQVTDSGLSFEFADGWQSQFSAGIRTIVVVAVIPLGVVQLGSLNKVIEDMEVVTHIRNLFLSAQAYSISHVPSQIPSSLKSSSSQPDELKENLPSDIMPGCLHATEKTLKNETVEVSVPLQCSGKDYAPHSAYEKMTDTLTKHEGPEFYSDESSILLQSISNMMNVEHQEFEERRPLNGMKCEGGSSGCKDMRLESEKNISSFLNNSVTNNASTNDLICPEKITVDSACFPSVFLDAVVFESGKLHHVDISQKEVLNFATQPSDANTQKHTEKSKFQIEPCYMDTSYTLKFPAGCELHEALGPAFLKGSKGFDWPVLVNQDMKTVEMQDNLSTSQLTTESHPEHLLEAMVANICHSNDVNSELSFCTSIQSAMVSGKNHEASIHNVHTINSECYSIDQPSLVKEDKHPCLSSSSGICGVMSSKGVSSSFPNSNSGQFERSSEPSKNSKKRARPGESCRPRPRDRQLIQDRIKELRELVPNGAKCSIDSLLERAIKHMLFLQSITKHADKLTKFADTKSKLHHMETDIRGSSSYEQGSSWAMEVGGHLKVHSILVENLGKNGQMLVEMLCEECSHFLEIAEAIRSLGLTILKGATKAHGEKIWICFVVEGQNNRNNVHRLDILWPLVQILQSKSTVNSQ* 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0017 747 PANTHER BHLH TRANSCRIPTION FACTOR-LIKE PROTEIN 6 747 - -
Apr4g0017 747 MobiDBLite consensus disorder prediction 185 206 - -
Apr4g0017 747 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 8 169 IPR025610 -
Apr4g0017 747 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 6 747 IPR043561 GO:0003700|GO:0006355
Apr4g0017 747 MobiDBLite consensus disorder prediction 537 575 - -
Apr4g0017 747 MobiDBLite consensus disorder prediction 551 575 - -
Apr4g0017 747 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 560 609 IPR011598 GO:0046983
Apr4g0017 747 MobiDBLite consensus disorder prediction 185 199 - -
Apr4g0017 747 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 573 615 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0017 Apr-Chr4 175064 181861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0017 2 742 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 40.516 6.66e-163 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0017 - - ccaj:109796613 1209.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0017 4 175064 181861 Apr4g0017 4 175064 181861 ECH
Apr4g0017 4 175064 181861 Apr8g0316 8 2643903 2649277 PCT