Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0014 ATGTCTATGGCTTCCTCAAGTGGAAATGGCTCTGGCTCTCCTTGCGGAGCATGCAAGTTCCTGAGACGAAAGTGTGCAGCTGATTGCATCTTTGCACCTTACTTTTGCTCAGAACAAGGCCCTGCAAGATTTGCAGCCATTCATAAGGTGTTTGGTGCCAGCAATGTTTCCAAGTTGCTTTTGCATATACCAGCTCATGATCGTTGTGAGGCGGTTGTCACTATTGCTTATGAGGCCCAGGCTCGCATTAGAGACCCTGTTTATGGCTGTGTCTCTCACATTTTTGCCTTGCAGCAACAGGTAGCTTGCTTGCAAGCCCAACTGATGCAGGTGAAGGCTCAGCTTGCGCAGAACCTGATGGAGTCTAGGAACATAGAGAAACAGTGGCCAGGGAACAATAATGTTGCAGGATTACCAATGAATAGTTCATTTTGTCCCAATAATTACATGAACCCTATATCTCCTCAGAGCTCTATGGAGTCAATTGATCACAACAGCATCAATGATGGAATGGGCATGCAAGATATACAAAGTAGAGAGGATTTCTCATTCCAAGCTTCTTCTAAGAAAAGATCATATAACAACCATGATTTGGGTGAGCTGCAAGAATTAGCACTTAGGATGATGAGGAACTGA 636 0.4465 MSMASSSGNGSGSPCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKAQLAQNLMESRNIEKQWPGNNNVAGLPMNSSFCPNNYMNPISPQSSMESIDHNSINDGMGMQDIQSREDFSFQASSKKRSYNNHDLGELQELALRMMRN* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0014 211 Coils Coil 94 114 - -
Apr4g0014 211 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 3 210 - -
Apr4g0014 211 Pfam Lateral organ boundaries (LOB) domain 14 112 IPR004883 -
Apr4g0014 211 ProSiteProfiles LOB domain profile. 13 115 IPR004883 -
Apr4g0014 211 PANTHER LOB DOMAIN CONTAINING PROTEIN 3 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0014 Apr-Chr4 140176 141651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0014 5 211 AS2 family AT2G42430 54.508 2.56e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Apr4g0014 LOB 8.2e-37 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0014 4 140176 141651 Apr4g0014 4 140176 141651 ECH
Apr4g0014 4 140176 141651 Apr8g0311 8 2598818 2600347 PCT