Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0008 ATGGACTTAAACTACCCAGAAGAGTATTCCAAGAGCTCCAGCGAAGAAACTGAACGATCATCAGAGCAAAATGATGATATGGGAACTGGGAGATCCTATGGGTGTATCTTTTGCAAGAGAGGCTTCACCACAGCACAAGCTTTAGGTGGACACATGAACATACACAGGAAAGAAAGAGCCAACAAGAACAAACCCAGTTTTGTACCTCCTTCCACCTCAAGCAAAGTTGATGACAACAACTATTCAGAAATTCCAAGCCATCTTGTTGGAGGGAATTGTTATTCCACTTCTCCTGTGGTAGAAACTAATAGCTACCACCATCAAGTTTATTTTCCAGCAACCGCATGTGGTATTACACCTTCCCTTGTGCAAAATAGTGAAGTCTTGTGTGTAGAAAACCAAAGGGATCCTCACCTGTTTGCACACGATTGGAGGAAGAGAAATGTGAGCTTGTATACTAGTCCCTTTTGTGTTCATGAAATTAAAGACAAGTTTGAAGACAGTGAAGAGAATGGTCTGGATTTGGAGCTGAGACTGGGTCATCATCCATAG 552 0.4221 MDLNYPEEYSKSSSEETERSSEQNDDMGTGRSYGCIFCKRGFTTAQALGGHMNIHRKERANKNKPSFVPPSTSSKVDDNNYSEIPSHLVGGNCYSTSPVVETNSYHHQVYFPATACGITPSLVQNSEVLCVENQRDPHLFAHDWRKRNVSLYTSPFCVHEIKDKFEDSEENGLDLELRLGHHP* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0008 183 PANTHER OS07G0101800 PROTEIN 6 183 - -
Apr4g0008 183 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
Apr4g0008 183 SUPERFAMILY beta-beta-alpha zinc fingers 31 60 IPR036236 -
Apr4g0008 183 MobiDBLite consensus disorder prediction 65 79 - -
Apr4g0008 183 Gene3D Classic Zinc Finger 10 84 - -
Apr4g0008 183 MobiDBLite consensus disorder prediction 1 27 - -
Apr4g0008 183 MobiDBLite consensus disorder prediction 9 25 - -
Apr4g0008 183 MobiDBLite consensus disorder prediction 53 79 - -
Apr4g0008 183 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
Apr4g0008 183 PANTHER TRANSCRIPTIONAL REGULATOR TAC1-LIKE 6 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0008 Apr-Chr4 108789 109340 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0008 24 76 C2H2 Transcription Factor Family AT3G09290 50.000 1.65e-13 63.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0008 4 108789 109340 Apr4g0008 4 108789 109340 ECH
Apr4g0008 4 108789 109340 Apr8g0308 8 2581164 2581754 PCT