Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0007 ATGGAAGGAAACTATCTGACCAGAACCACGCATAAAGGGGACAGCTTTGGCTTTGAGGAGCACATATGGGGAACTTCATGGCCTGCAAGAAACTATGCTTGTAGCTTCTGCAAGAGAGAGTTTAAGTCTGCACAAGCTTTGGGTGGTCACATGAATGTTCACAGAAGGGATAGGGCAAGATTGAGATCATCCTTATCCACATGGGTTTCTGAGTGTCCTAAACCTAACCCTAGCATTAAGCCTAACCCAACTCATCTTTCACCCTCCTCTCCATCATCATGTCTATCTGATAAACTGTTGAATAATGCACATCGTTCTCCACTTTGTAGCCCTTGTATGAGTTTGTCTTCTTCAGTACTGACCCCAGCTTCTCTCAGTGGAGAGAAGAAACCAAAACTCTCATCTTCCCAACAGCTTCCTCTTTTGAGTCCTCAAAGCAGAAGGGAAATTGAGATGAGTAATAAAACTGGGAGTGGGTTAGGAGTTGAGGAATTACAGGGTTGTGCAATGGGAGTGGAATGCAAGGTTTTCAAGAGTAACGAGCATAACATCAAGTTGGAGTTGGGAATAGGGTTGATTAAACACCCAAAGGAGAAGTTAGATTTGGAGCTACGATTGGGCCATTGCTAG 630 0.4413 MEGNYLTRTTHKGDSFGFEEHIWGTSWPARNYACSFCKREFKSAQALGGHMNVHRRDRARLRSSLSTWVSECPKPNPSIKPNPTHLSPSSPSSCLSDKLLNNAHRSPLCSPCMSLSSSVLTPASLSGEKKPKLSSSQQLPLLSPQSRREIEMSNKTGSGLGVEELQGCAMGVECKVFKSNEHNIKLELGIGLIKHPKEKLDLELRLGHC* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0007 209 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Apr4g0007 209 MobiDBLite consensus disorder prediction 123 148 - -
Apr4g0007 209 Pfam C2H2-type zinc finger 32 56 - -
Apr4g0007 209 Gene3D Classic Zinc Finger 24 73 - -
Apr4g0007 209 SUPERFAMILY beta-beta-alpha zinc fingers 29 58 IPR036236 -
Apr4g0007 209 SMART c2h2final6 32 54 IPR013087 -
Apr4g0007 209 PANTHER TRANSCRIPTIONAL REGULATOR SUPERMAN 19 208 - -
Apr4g0007 209 PANTHER OS07G0101800 PROTEIN 19 208 - -
Apr4g0007 209 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Apr4g0007 209 MobiDBLite consensus disorder prediction 72 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0007 Apr-Chr4 98466 99095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0007 20 207 C2H2 Transcription Factor Family AT3G23130 41.667 6.94e-26 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr4g0007 zf-C2H2_6 6.8e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0007 - - gmx:102660083 240.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0007 4 98466 99095 Apr8g0307 8 2572162 2572794 PCT