Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0002 ATGGCGTCGGAAGAGCCCACCCTGGCCGTGGAGCCTGCTCTGGAGGAGCCGACAACTGACGCCGACCCACCGGCCGAAGAGAATGAGCCCACCAATCCTGCGCCCAAGCCCAAGAAAGCAGCCAAGGAGCCCAAGCCCAGGAAGCCTGCTGCTCCCAGATCCCGGAAGCCAGCATCTCATCCTCCCTACGAAGAGATGATTAAGGACGCTATCGTCACGCTGAAGGAGAAAACAGGTTCGAGCCAGTACGCGATTGCCAAGTTCCTTGAAGAGAAGCACCAACAGCTTCCATCGAACTTCAGGAAGCTCTTGTTGTACCATTCCAAGAAGCTCGTTGCTTCTGGAAGGCTGGTCAAGGTCAAAGGATCCTTCAAGCTTCCACCGGCCAAATCTTCTGCTCCCAAGCCTACTCCAGCCAAGAAGAAAGCTGTACCTGCTAAGCCCAAGTCTAAGCCTAAGCCCAAGTCGAAGGCTCAATCTAAGCCCAAGCCCAAAGCCAAAGCAGCTCCCGCTGCTAAAGAGACCAAAACGACTAAGTCCACGGCTGCTAAGGCTCCTGCCAAGACCAAGCCCGCAGCCAAGCCCAAGCCTAAACCAGCTGCCAAGCCAAAGGCCGCAGCTAAGCCCAAAGCTGCTGCGACTAAGGCTAAGCCTGCTGCGGCGGCAAAGCCCAAGCCCGCTGGCAAGGCGAAGCCAGCTGCTAAGGCAAAGCCTAAAGAGAGGCCTGCGAAGGCTTCTCGAACATCGACAAGGACATCTCCAGGGAAGAAATCCCCTGCGCCCAAACCGGCGGCGAAGAAGGCCGCGCCGGCGAAGAAAGCTCCGGCGAAAAGTGTTAAGCCTAAGAGTGTCAAGTCGCCGGCGAAGAAGAAACAGGCGGCGACGACGAGGAAGGGGAGGAAGTGA 906 0.5751 MASEEPTLAVEPALEEPTTDADPPAEENEPTNPAPKPKKAAKEPKPRKPAAPRSRKPASHPPYEEMIKDAIVTLKEKTGSSQYAIAKFLEEKHQQLPSNFRKLLLYHSKKLVASGRLVKVKGSFKLPPAKSSAPKPTPAKKKAVPAKPKSKPKPKSKAQSKPKPKAKAAPAAKETKTTKSTAAKAPAKTKPAAKPKPKPAAKPKAAAKPKAAATKAKPAAAAKPKPAGKAKPAAKAKPKERPAKASRTSTRTSPGKKSPAPKPAAKKAAPAKKAPAKSVKPKSVKSPAKKKQAATTRKGRK* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0002 301 Gene3D - 54 140 IPR036388 -
Apr4g0002 301 SUPERFAMILY "Winged helix" DNA-binding domain 56 140 IPR036390 -
Apr4g0002 301 MobiDBLite consensus disorder prediction 1 67 - -
Apr4g0002 301 Pfam linker histone H1 and H5 family 60 126 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr4g0002 301 MobiDBLite consensus disorder prediction 142 162 - -
Apr4g0002 301 PANTHER HISTONE H1 2 198 - -
Apr4g0002 301 PANTHER HISTONE H1 174 301 - -
Apr4g0002 301 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 59 128 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr4g0002 301 PRINTS Histone H5 signature 46 67 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Apr4g0002 301 PRINTS Histone H5 signature 73 90 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Apr4g0002 301 PRINTS Histone H5 signature 149 163 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Apr4g0002 301 PRINTS Histone H5 signature 184 201 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Apr4g0002 301 PRINTS Histone H5 signature 206 225 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Apr4g0002 301 PANTHER HISTONE H1.1 2 198 - -
Apr4g0002 301 PANTHER HISTONE H1.1 174 301 - -
Apr4g0002 301 SMART h15plus2 57 123 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr4g0002 301 MobiDBLite consensus disorder prediction 32 50 - -
Apr4g0002 301 MobiDBLite consensus disorder prediction 119 301 - -
Apr4g0002 301 MobiDBLite consensus disorder prediction 283 301 - -
Apr4g0002 301 CDD H15 57 137 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0002 Apr-Chr4 10577 11844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0002 61 136 Single Myb Histone (SMH) Gene Family AT1G72740 32.911 4.34e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0002 K11275 - pop:18099660 137.887