Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2321 ATGGAAAATGCACTTGTGTCTCCTCGCGATCCGCCACAAAGAGAGATATCAGCCAGATGGAATCCAATTGCAGCATGTCGGCCTATAATTGATGAATCACCTGTGTTTTATCCTACTATTGAGGAGTTTGAGGACACACTTGGTTACATAGCTAAGATTCGCCCTCAAGCTGAACGTTATGGCATATGTAGGATTGTCCCTCCAGCTTCTTGGGTTCCACCTTGCCCTCTTAAGGAAAAAGATTTATGGGAGAAAGCAAAATTTCCCACCCGTGTTCAGCAAGTTGACTTGCTTCAAAACAGGGAGCCCATGAAAAAGAAAGGTAGGGGAAGGAAACGAAAACGTTGCAGGCAGTCAAGGATGGGCTCAATGGGGAGAACTGCCAATTCAAATTCTGACGATGATGAGAAGTTTGGATTCCAATCAGGGTCAGACTTCACATTTAGAGAGTTTCAGCAATATGCTAATCATTTTAAACATAGCTATTTTGGGTTGAATGATGCCAATGAGGATGGAAGAGTTAGTTATAATAATCACCACAATAGATGGGAGCCTTCTGTGGAGGAAATTGAAGGTGAATACTGGCGAATAGTAGAGCAACCAACTGATGAGGTTGAGGTGTATTATGGAGCTGATTTGGAAACTAGAGCACTTGGAAGTGGGTTTCCTAAGACATCATCCTTAACTAGGACTGATTCAGATAGGTACGCCCTATCTGGCTGGAATCTGAATAACTTTGCACGACTTCCAGGCTCTGCATTATGTTTTGAAGGAGGTGATATCTCTGGAGTTCTAGTTCCATGGCTATATGTTGGAATGTGCTTTTCATCATTTTGCTGGCATGTTGAGGATCATCACCTCTATTCACTTAATTATCTGCACTGGGGTGACCCCAAAGTTTGGTATGGAGTACCTGGAAGCCATGCTTCAGCTTTGGAAGATGCAATGAAAAAGCACTTGCCTGATTTATTTCAGGAACAACCACATTTACTCAATGAATTGGTGACTCAGTTATCTCCTTCAATTCTTAAATCCGAGGGCGTGCCTATCTATCGCACTGTCCAGCATTCAGGGGAGTTCGTTATTACCTTTCCAAGAGCATACCATTGTGGCTTCAATAGTGGCTTTAACTGTGCAGAGGCTGTGAATGTGGCTCCTTTTGATTGGTTTGAACATGGCCAGATTGCTGCCGAGCTTTATAGTTTGCAGGGCCGCAAGACATCGTTGTCTCATGACAAGTTATTATTTGGATGTGCTCAGGAAGCTGTGCATGCCCTTGCAGAGCTAACTCTTCATGGAAAAGAAGATCTAAAATATTTAAAATGGAGAAGTTATTGTGGAAAAGATGGGGTTCTTACCAAGGCAGTTAAGGCAAGGATAACTATGGAAAAGGAGAGGCTTGAGTGTCTTCCAACTCATTTAAAGATGCTGAAGATGAAAAAAAATTTTGATTCGTCAGAAGAAAGAGAATGCTTCTCTTGCTTCTATGACTTGCACCTATCTGCTGTTGGTTGCAAGTGCACTCCTGACAGTTATTCTTGTCTCAAACACTCAAATTTGTTCTGCTCCTGTGAAATGAACAGAAGATTTGTTCTGTTTCGTTTTACCATGTATGAGCTAAGTACTTTGGTTGAAGCATTAGAAGGAAATTCGCATGCTATTAAAGTGTGGGCAAATAAAAACACTAGAATGGTTTCTGTTACTGCCGAGGATGCTTGCATGTATAGACAAAATGTGGAGAGAGCTATGTGCCCAATAAGGAATTACGAAGAAGGGCAAAGCTCAACTTTTTATGCAGGAACTAATGAGAATCCAAATTCAAATTTACCTACCGGTTCTTACAGCCGTGTTTCTTCAGAGTTAGTTCACTCAGAGTCTCACCATGAAACTTTTAGGGCACCATATGGCACTACAGCGTGTCTTATGGATAATATAAATGGAAACAATGCAGTTGGGGTGGAGCAGGGAGGTTCTGTGGATTTGAATATTGATGTTATGTCTGGTGAACCTGAAAATTCTTCTATACATGTTGCTGATAACCATCGAAATGAAGGTGTTCCATATGTGGAGAAAGTGTGCTATGCAGAGACCAGAAAGGAACAAGACAACAGCATGGATCCCGTGCCTGGTGGTATTTCTGCCTCGGAGAAAGGTTTTTCTTCATGTTCAAGGGATGTTCGAAATCCTTGTAGACTTGATGGCTGTAAATTGTTTGGGGTGACTATGAAAATGCATTCAGATTTAGGAGAGCAACTCAACAGTGCATTTAAAATGCGAGACGTAGAAACCTCCAATACAAGTAAATCTCTGACAAACCAAAGCTTCCTAAGCCAAAAGTTTGGTGTATCTGTTGAGCCTGTAAGCTTTGGTTCTATTGTGTATGGAAAGCTGTGGTGCAGCAAGCATGCAATATATCCAAAAGGATTCAAGAGTCGGGTTAAGTTCTTTAGCATTCTTGATCCGGCAAGAATCTGTAACTATGTTTCTGAAGTCTTGGATGCTGGATTTCTTGGGCCTGTTTTCCAGGTTACTATGGAAGAACTTCCAAGTGAGGTCTTCACAAACCCCTCACCAGATAAGTGCTGGGAAACAGTTCTTGACAGACTAAAACATGAAATTAAGAGGCGAAGTAGTCTAGGTGAACTGGAACTTCCACCCGTGGAACTTATGCAAAACATTAACGGTCATAAAATGTTTGGATTCCTTTCACCATCCATTATTCAGGCCATTGAAGCTCAGGATCCCAATCATCAGAGCATAGAGTATTGGAAGCGCAAAGAAATTGTCTCCGAATCTTCTGGCAGTGCCATTGGTGACCGTAAGATCAGTCATGGTTCAAGTAACTCTCTAGGCAACATCAAGACCAAAATTTTTGGTGTCAGTTTGAAACAGAAGGAGCAAGATAGCATCAGAGGAAGTTGTGATTCTTTTGAAGAGATGAAACTGATATTGCAAGGATTCTTAAAGAAGGCAAGTCCTGATGAGCTGAGTGCAATGCATAAGTTATTCAGCTCTGATGCACAATTCACTAACTGGAGATTGGCATTTGTAACTCTGATAGAGGAAATGCAGAAGGCTTGGGCATGA 3087 0.4166 MENALVSPRDPPQREISARWNPIAACRPIIDESPVFYPTIEEFEDTLGYIAKIRPQAERYGICRIVPPASWVPPCPLKEKDLWEKAKFPTRVQQVDLLQNREPMKKKGRGRKRKRCRQSRMGSMGRTANSNSDDDEKFGFQSGSDFTFREFQQYANHFKHSYFGLNDANEDGRVSYNNHHNRWEPSVEEIEGEYWRIVEQPTDEVEVYYGADLETRALGSGFPKTSSLTRTDSDRYALSGWNLNNFARLPGSALCFEGGDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHASALEDAMKKHLPDLFQEQPHLLNELVTQLSPSILKSEGVPIYRTVQHSGEFVITFPRAYHCGFNSGFNCAEAVNVAPFDWFEHGQIAAELYSLQGRKTSLSHDKLLFGCAQEAVHALAELTLHGKEDLKYLKWRSYCGKDGVLTKAVKARITMEKERLECLPTHLKMLKMKKNFDSSEERECFSCFYDLHLSAVGCKCTPDSYSCLKHSNLFCSCEMNRRFVLFRFTMYELSTLVEALEGNSHAIKVWANKNTRMVSVTAEDACMYRQNVERAMCPIRNYEEGQSSTFYAGTNENPNSNLPTGSYSRVSSELVHSESHHETFRAPYGTTACLMDNINGNNAVGVEQGGSVDLNIDVMSGEPENSSIHVADNHRNEGVPYVEKVCYAETRKEQDNSMDPVPGGISASEKGFSSCSRDVRNPCRLDGCKLFGVTMKMHSDLGEQLNSAFKMRDVETSNTSKSLTNQSFLSQKFGVSVEPVSFGSIVYGKLWCSKHAIYPKGFKSRVKFFSILDPARICNYVSEVLDAGFLGPVFQVTMEELPSEVFTNPSPDKCWETVLDRLKHEIKRRSSLGELELPPVELMQNINGHKMFGFLSPSIIQAIEAQDPNHQSIEYWKRKEIVSESSGSAIGDRKISHGSSNSLGNIKTKIFGVSLKQKEQDSIRGSCDSFEEMKLILQGFLKKASPDELSAMHKLFSSDAQFTNWRLAFVTLIEEMQKAWA* 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2321 1028 ProSiteProfiles FYR domain FYRC motif profile. 836 926 IPR003889 GO:0005634
Apr3g2321 1028 ProSiteProfiles FYR domain FYRN motif profile. 776 834 IPR003888 GO:0005634
Apr3g2321 1028 ProSiteProfiles JmjN domain profile. 33 74 IPR003349 -
Apr3g2321 1028 SMART cupin_9 238 401 IPR003347 -
Apr3g2321 1028 SMART fyrc_3 840 932 IPR003889 GO:0005634
Apr3g2321 1028 Gene3D - 782 918 - -
Apr3g2321 1028 MobiDBLite consensus disorder prediction 103 136 - -
Apr3g2321 1028 MobiDBLite consensus disorder prediction 105 120 - -
Apr3g2321 1028 Pfam jmjN domain 34 67 IPR003349 -
Apr3g2321 1028 ProSiteProfiles JmjC domain profile. 238 401 IPR003347 -
Apr3g2321 1028 SMART JmjN_1 32 73 IPR003349 -
Apr3g2321 1028 SMART fyrn_3 790 834 IPR003888 GO:0005634
Apr3g2321 1028 Pfam C5HC2 zinc finger 491 542 IPR004198 -
Apr3g2321 1028 Pfam F/Y rich C-terminus 838 924 IPR003889 GO:0005634
Apr3g2321 1028 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 1 1027 - -
Apr3g2321 1028 SUPERFAMILY Clavaminate synthase-like 66 422 - -
Apr3g2321 1028 MobiDBLite consensus disorder prediction 122 136 - -
Apr3g2321 1028 Gene3D Cupin 18 385 - -
Apr3g2321 1028 Pfam F/Y-rich N-terminus 787 831 IPR003888 GO:0005634
Apr3g2321 1028 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 1027 - -
Apr3g2321 1028 Pfam JmjC domain, hydroxylase 268 384 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2321 Apr-Chr3 38748591 38756937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2321 777 962 JUMONJI Transcription Factor Family AT1G30810 53.763 9.30e-53 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Apr3g2321 JmjC 3.4e-45 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2321 - - gmx:100814590 1638.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g2321 3 38748591 38756937 Apr3g2321 3 38748591 38756937 ECH