Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2301 ATGAAGTCCACATTTGTGCTTCTTCTGATGTTAGTCCTGGCTCCAAATCTATACTCAGCAGCACCCTCTCCCACCATTTCCCCTACCAACTATGCTATGTGCCCAGTGGACATGAATTATGTGCTAACAGTCCCTTGGAACTCCTCTAGTTGCCTTAACTTCCAACCCTTGCCAACCCAAAACCAAACACACAACACTCTTTGTTGCCAAGCACTGTTATCTCTCTTTGGCATAGCACTTGCAGAAAATCTCAAGAAAAACTCTCTTTTCCAACTTCCTAACATCACTACCTCTACATCTTGCCTTCAAGATTTCCAATCCAAACTCACTTCCCTTTCACTTCCCAATAACATTGTGTCCTCTTGCTTTGATCCTCTTCAATTTGTCATCACTCCCAATATCTGTGCTCATATTCAATATAAGCAAGATTGGCAAAGTAGGCTTGGTCCTACACCGCTGTTAAACACTGCATGTAAACCAGACCTTAGTGATCTTACCAATTGTGCTGCATGTGTGGATGAAGGACTCAAGGTTGTACAGATGCTGAATTCCATTGATGGTAATACTTCACATTCCAAAGGCTGCTTCTATTTCACAATAATTTATGTTGCTGGAATTGTGAATCAGCTTGGACCTGAAAGCAGAGGTGCTATGTCTTGCATTTTTGAATTGCCTATTAATTCCCAAGTGGGTTCAAGAAGAAAGAGCCATCATGCTCTTGTATACGGGTTAATTGCAGCTTTTGTTGCATTCCTAGGTATCACGTTTTCTTTGTTAGGATTTTATTTTTGGTACACCAGGTGGGTGAAAAGAAAAAATATTGAAAATTTGCCAGCCTATGCTGAACCAATGGAACAAACTTCAGGCCCAAGATTGAGACCAAACACATCAATTTGGTTCAAGTTTGAGGACCTTGAGAAGGCTACCAACAATTTTTCACCCCAGAACATCATTGGTAAAGGTGGGTTTGGGATAGTTTACAAGGGTATTCTATCTGATGGCACCATGGTTGCAGTTAAAAAAATTGAAGAATCTGATTTTCAAGGAGATGCTGAGTTCTATAGCGAGGTGGAGATTATAAGCAACTTGAAGCACCGCAATCTAGTGCCATTACGAGGGTGTTGTGTGGTTGATGAGGAGGATGAAAATCCTGATTACAGAAAAAGGTACCTTGTTCATGATTATATGCCAAATGGTAGCCTTGAAGATCATCTCTTTCCAAAATCGCTAACTTGGTCTCAAAGAAGAAGCATAATCTTGGATGTGGCAAATGCGTTGGTTTATTTGCACTTTGGAGTTAAACCTGCAATTTATCACAGAGATATCAAAGCCACCAATATACTGCTTGATGCAGATATGAGGGCAAAAGTTGCAGATTTTGGGCTAGCAAAACAAAGCAGTGAAAGTAGGTCTCAGGTAAACACTAGAGTGGCTGGAACTCGTGGATATGTAGCCCCAGAATATGCACTTTATGGTCATCTAACTGAGAAGTGTGATGTGTATAGCTTTGGTGTGGTTGTTTTGGAGATAATGTGTGGAAGAAAAGCTCTTGAGTTGTCTTCATCAGGAATACCAACTTTCTTAATCACAGATTGGGTTTGGTCATTAATGAAATCTGGAAACTTAGAAAAGGCTTTGGATTCTTCTATCATAACAGATGGAAATTCTGCTAGAAACATATTGGGAAGATATTTGGGTGTTGGAATTCTTTGTTCTCATGTAATGGTTGATTCTAGGCCAACAATTTTGGATGCTTTGAAGATGTTAGAAGGGGACATTGAGGTTCCACCAATTCCTGATAGCCCAATGACTTTTGGGCACCAAATGTTTTCCAATGCTGATTCAATGGAAAAGAATATTGAAAATCAAGATGTAAAGTATATATGA 1887 0.398 MKSTFVLLLMLVLAPNLYSAAPSPTISPTNYAMCPVDMNYVLTVPWNSSSCLNFQPLPTQNQTHNTLCCQALLSLFGIALAENLKKNSLFQLPNITTSTSCLQDFQSKLTSLSLPNNIVSSCFDPLQFVITPNICAHIQYKQDWQSRLGPTPLLNTACKPDLSDLTNCAACVDEGLKVVQMLNSIDGNTSHSKGCFYFTIIYVAGIVNQLGPESRGAMSCIFELPINSQVGSRRKSHHALVYGLIAAFVAFLGITFSLLGFYFWYTRWVKRKNIENLPAYAEPMEQTSGPRLRPNTSIWFKFEDLEKATNNFSPQNIIGKGGFGIVYKGILSDGTMVAVKKIEESDFQGDAEFYSEVEIISNLKHRNLVPLRGCCVVDEEDENPDYRKRYLVHDYMPNGSLEDHLFPKSLTWSQRRSIILDVANALVYLHFGVKPAIYHRDIKATNILLDADMRAKVADFGLAKQSSESRSQVNTRVAGTRGYVAPEYALYGHLTEKCDVYSFGVVVLEIMCGRKALELSSSGIPTFLITDWVWSLMKSGNLEKALDSSIITDGNSARNILGRYLGVGILCSHVMVDSRPTILDALKMLEGDIEVPPIPDSPMTFGHQMFSNADSMEKNIENQDVKYI* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2301 628 Pfam SPARK 32 196 IPR043891 -
Apr3g2301 628 SMART serkin_6 312 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g2301 628 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 30 605 - -
Apr3g2301 628 CDD STKc_IRAK 318 591 - -
Apr3g2301 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 437 449 IPR008271 GO:0004672|GO:0006468
Apr3g2301 628 ProSiteProfiles Protein kinase domain profile. 312 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g2301 628 ProSitePatterns Protein kinases ATP-binding region signature. 318 341 IPR017441 GO:0005524
Apr3g2301 628 SUPERFAMILY Protein kinase-like (PK-like) 290 590 IPR011009 -
Apr3g2301 628 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 30 605 - -
Apr3g2301 628 Pfam Protein kinase domain 315 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g2301 628 Gene3D Phosphorylase Kinase; domain 1 280 395 - -
Apr3g2301 628 Gene3D Transferase(Phosphotransferase) domain 1 396 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2301 Apr-Chr3 38603142 38605028 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2301 16 610 Receptor kinase-like Gene Family AT1G11050 57.237 0.0 669
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Apr3g2301 Pkinase 2.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2301 - - gmx:100788367 859.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1128 1 19515107 19518160 Apr3g2301 3 38603142 38605028 PCT